View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13238_low_7 (Length: 502)

Name: NF13238_low_7
Description: NF13238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13238_low_7
NF13238_low_7
[»] chr2 (14 HSPs)
chr2 (24-496)||(31612633-31613105)
chr2 (286-392)||(31608359-31608465)
chr2 (74-177)||(31607125-31607228)
chr2 (286-430)||(31623768-31623912)
chr2 (149-227)||(31623614-31623693)
chr2 (149-227)||(31605021-31605099)
chr2 (367-430)||(31605315-31605378)
chr2 (354-430)||(31608574-31608647)
chr2 (372-430)||(31619231-31619289)
chr2 (303-430)||(31623932-31624059)
chr2 (351-400)||(31605227-31605276)
chr2 (149-227)||(31607302-31607379)
chr2 (366-405)||(31613080-31613119)
chr2 (289-325)||(31619094-31619130)


Alignment Details
Target: chr2 (Bit Score: 417; Significance: 0; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 24 - 496
Target Start/End: Original strand, 31612633 - 31613105
Alignment:
Q  24 accgtgaaatgtagaggcaacttgttgtgaagccgataatcattttggtgattttgtaattcataaaccaaaattaaaaaactagaaccatgtaatatta 123  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  31612633 accgtgaaatgtagaggcaacttgtcgtgaagccgataatcatttttgtgattttgtaattcataaaccaaaattaaaaaactagaagcatgtaatatta 31612732  T
Q  124 actatcatccattctcatttcagtgtaagaatgccaaaacaatatccattaatttcatgagaaaattaattaaaacaactcctaattaatgtgcttaaac 223  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||     
T  31612733 actatcatccattctcatttcaatgtaagaatgccaaaacaatatccattaatttcatgagaaaattaattaaaacaaatcctaattaatgtgcttaaat 31612832  T
Q  224 aatgccctaagaactcttattaccattttctgaaaagaaaaatcaccactcactcatcgccattgtcaagttgatcttcatcatcatcagaattttttgg 323  Q
    |||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31612833 aatgccctgagaactcttattaccatttcctaaaaagaaaaatcaccactcactcatcgcctttgtcaagttgatcttcatcatcatcagaattttttgg 31612932  T
Q  324 tggatttgttggtagcagaggattatgcgtttgcggatcagtccccaatcctccgcttcctgtgctacctattggtttctttggatgaacttttgttttg 423  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  31612933 tggatttgttggtagcagaggattatgcgtttgcggatcagtccccaatcctccgcttcctgtgctacctattggtttctttggattaacttttgttttg 31613032  T
Q  424 tttttgtcatgttcatcatcataatcatttgtcgatgttggttcatgccccaatcccccgcttcctatgctac 496  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||    
T  31613033 tttttgtcatgttcatcatcataatcatttgtcgatgttggatcatgccccaatcctccgcttcctgtgctac 31613105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 286 - 392
Target Start/End: Original strand, 31608359 - 31608465
Alignment:
Q  286 ttgtcaagttgatcttcatcatcatcagaattttttggtggatttgttggtagcagaggattatgcgtttgcggatcagtccccaatcctccgcttcctg 385  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | | ||||||||||||||||||| ||| |||||||||    
T  31608359 ttgtcaagttgatcttcatcatcatcagaattttttggtggatttgttggtagctgaggattctccatttgcggatcagtccccaaaccttcgcttcctg 31608458  T
Q  386 tgctacc 392  Q
    |||||||    
T  31608459 tgctacc 31608465  T

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Target: chr2; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 74 - 177
Target Start/End: Original strand, 31607125 - 31607228
Alignment:
Q  74 attttgtaattcataaaccaaaattaaaaaactagaaccatgtaatattaactatcatccattctcatttcagtgtaagaatgccaaaacaatatccatt 173  Q
    ||||| |||||||||||||||||| ||| |||||| | |||||||||||||||||||||| |||| |||||| ||||| ||||||||||| |||||||||    
T  31607125 attttctaattcataaaccaaaataaaacaactagtagcatgtaatattaactatcatccgttcttatttcaatgtaaaaatgccaaaaccatatccatt 31607224  T
Q  174 aatt 177  Q
    ||||    
T  31607225 aatt 31607228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 286 - 430
Target Start/End: Original strand, 31623768 - 31623912
Alignment:
Q  286 ttgtcaagttgatcttcatcatcatcagaattttttggtggatttgttggtagcagaggattatgcgtttgcggatcagtccccaatcctccgcttcctg 385  Q
    ||||||||||||||||||||||||||||||| ||||||||||||| ||||||||   | | ||| ||| || ||| |||||||||||||||| |  ||||    
T  31623768 ttgtcaagttgatcttcatcatcatcagaatcttttggtggattttttggtagctttgtaatattcgtgtgtggaccagtccccaatcctcctccacctg 31623867  T
Q  386 tgctacctattggtttctttggatgaacttttgttttgtttttgt 430  Q
    ||||||||  ||||||| || ||  |||||| |||||| ||||||    
T  31623868 tgctacctggtggtttccttcgaccaactttggttttggttttgt 31623912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 149 - 227
Target Start/End: Original strand, 31623614 - 31623693
Alignment:
Q  149 taagaatgccaaaacaatatccattaatttcatgagaaaattaattaaaacaactcctaattaatgtgc-ttaaacaatg 227  Q
    ||||||| | ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  31623614 taagaatacaaaaacaatatccattaattacatgaaaaaattaattaaaacaactcctaattaatgtgcattaaacaatg 31623693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 149 - 227
Target Start/End: Original strand, 31605021 - 31605099
Alignment:
Q  149 taagaatgccaaaacaatatccattaatttcatgagaaaattaattaaaacaactcctaattaatgtgc-ttaaacaatg 227  Q
    ||||||| |||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||    
T  31605021 taagaatcccaaaacaacgtccattaatttcatgagaaaattaattaaaacaact-ctaattaatgtgctttaaacaatg 31605099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 367 - 430
Target Start/End: Original strand, 31605315 - 31605378
Alignment:
Q  367 cccaatcctccgcttcctgtgctacctattggtttctttggatgaacttttgttttgtttttgt 430  Q
    ||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||    
T  31605315 cccaatcctccgcctcctgtgctacctattggtttctttcgatcaacttttgttttgtttttgt 31605378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 354 - 430
Target Start/End: Original strand, 31608574 - 31608647
Alignment:
Q  354 ttgcggatcagtccccaatcctccgcttcctgtgctacctattggtttctttggatgaacttttgttttgtttttgt 430  Q
    ||||||||||||||||||||||||   |||||  ||| ||||||||||| ||| || ||||||||||||||||||||    
T  31608574 ttgcggatcagtccccaatcctcc---tcctggtctaactattggtttcattgcataaacttttgttttgtttttgt 31608647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 372 - 430
Target Start/End: Original strand, 31619231 - 31619289
Alignment:
Q  372 tcctccgcttcctgtgctacctattggtttctttggatgaacttttgttttgtttttgt 430  Q
    ||||||||||||||||||||| ||||||||||||  |  ||||||||||||||||||||    
T  31619231 tcctccgcttcctgtgctacccattggtttctttccaacaacttttgttttgtttttgt 31619289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 303 - 430
Target Start/End: Original strand, 31623932 - 31624059
Alignment:
Q  303 atcatcatcagaattttttggtggatttgttggtagcagaggattatgcgtttgcggatcagtccccaatcctccgcttcctgtgctacctattggtttc 402  Q
    ||||||||||||| ||||||||||| |||||  |  | ||| ||| | |||||  ||| |||||||||||||||  |||||| | |||||  ||||||||    
T  31623932 atcatcatcagaagtttttggtggaattgttattccctgagcattctccgtttttggaccagtccccaatcctcttcttcctttcctacccgttggtttc 31624031  T
Q  403 tttggatgaacttttgttttgtttttgt 430  Q
    |||  |  ||||||||||||||||||||    
T  31624032 tttccaacaacttttgttttgtttttgt 31624059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 351 - 400
Target Start/End: Original strand, 31605227 - 31605276
Alignment:
Q  351 cgtttgcggatcagtccccaatcctccgcttcctgtgctacctattggtt 400  Q
    |||||||| ||||||||||  ||||||||||||||||||||| |||||||    
T  31605227 cgtttgcgcatcagtcccctttcctccgcttcctgtgctacccattggtt 31605276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 227
Target Start/End: Original strand, 31607302 - 31607379
Alignment:
Q  149 taagaatgccaaaacaatatccattaatttcatgagaaaattaattaaaacaactcctaattaatgtgc-ttaaacaatg 227  Q
    |||||| |||||||||||||||| |||||| ||  || | ||||||||| ||||| ||||||||||||| ||||||||||    
T  31607302 taagaacgccaaaacaatatccactaatttaat--gacatttaattaaatcaacttctaattaatgtgctttaaacaatg 31607379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 366 - 405
Target Start/End: Original strand, 31613080 - 31613119
Alignment:
Q  366 ccccaatcctccgcttcctgtgctacctattggtttcttt 405  Q
    ||||||||||||||||||||||||||| || |||||||||    
T  31613080 ccccaatcctccgcttcctgtgctacccatcggtttcttt 31613119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 289 - 325
Target Start/End: Original strand, 31619094 - 31619130
Alignment:
Q  289 tcaagttgatcttcatcatcatcagaattttttggtg 325  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  31619094 tcaagttgatcttcatcgtcatcagaatttattggtg 31619130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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