View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13239_high_2 (Length: 601)
Name: NF13239_high_2
Description: NF13239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13239_high_2 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-135; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 183 - 427
Target Start/End: Complemental strand, 50271214 - 50270970
Alignment:
| Q |
183 |
tcttactatcttttgcccattcattgttaagattctaatatgattaaatcacttaattagtgtatatatagagtgaaagtatagtcacattataacatat |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50271214 |
tcttactatcttttgcccattcattgttaagattctaatatgattaaatcacttaattagtgtatatatagagtgaaagtatagtcacattataacatat |
50271115 |
T |
|
| Q |
283 |
cttttttgtgcaatgtttagataactatagttaacacaaagtcaacaagattagagatagatttattctagttaaacgaaaatattctttgttctttttc |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50271114 |
cttttttgtgcaatgtttagataactatagttaacacaaagtcaacaagattagagatagatttattctagttaaacgaaaatattctttgttctttttc |
50271015 |
T |
|
| Q |
383 |
aaaattttaaccatcacctttttctaattgatcttcatattcatc |
427 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50271014 |
aaaattttaaccatcacctttttctaattgatcttcatattcatc |
50270970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 12 - 95
Target Start/End: Complemental strand, 50271385 - 50271302
Alignment:
| Q |
12 |
catcatcatggttaggttactattctcttctaatgcgtcttctttcttcctttccccttttgtttcctacttgtacaacttaaa |
95 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50271385 |
catcatcatggttaggttactattctcttctaatgcgtcttctttcttcctttccccttttgtttcctacttgtacaacttaaa |
50271302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 539 - 584
Target Start/End: Complemental strand, 50270868 - 50270823
Alignment:
| Q |
539 |
ctgaatttgcattatgtacgtgaagtgtgtaggtggtacaaaaact |
584 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50270868 |
ctgaatttgcattatgtacgtgaagtgtgtaggtggtacaaaaact |
50270823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University