View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13239_high_3 (Length: 515)
Name: NF13239_high_3
Description: NF13239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13239_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 40102916 - 40102689
Alignment:
| Q |
19 |
aagattgtgctcgggtgaatgctaaccctaatcaatggagtgctgttgtgcagttaagacaacatgtttcgcatatgcgcagtatatttgatttggaaca |
118 |
Q |
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| T |
40102916 |
aagattgtactcgggtgaatgcgaacgctaatcaatggagtgctgttgtgcagttaagacaacatgtttcgcatatgcgcagtatatttgatttggaaca |
40102817 |
T |
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| Q |
119 |
ggctattttgaaacacggtgttggtaggaatgttgtgagaatcaaaaagatgaaacaaggtattgacnnnnnnnncgatagagaaagttgtgctaagaag |
218 |
Q |
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| T |
40102816 |
ggctattttgaaacatggtgttggtaggaatgttgtgagaatcaaaaagatgaaacaaggtattgacttttttttcgatagagaaagttgtgctaagaag |
40102717 |
T |
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| Q |
219 |
tttgttgattttgtaaaggcacaggttc |
246 |
Q |
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| T |
40102716 |
tttgttgattttgtaaaggcacaggttc |
40102689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 365 - 496
Target Start/End: Complemental strand, 6371112 - 6370983
Alignment:
| Q |
365 |
tcttaattcaaacttgattagtaataaacaataaagtacatacacaggacatgtccacaccagtnnnnnnnnnnnnnnnntgaattgattcaatgtattc |
464 |
Q |
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| T |
6371112 |
tcttaattcaaaattgattagtaataaacaataaagcacatacaca-gacatgtccacaccagt-aaaaaaaattgtaaatgaattgattcaatgtattc |
6371015 |
T |
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| Q |
465 |
caagagtaaaataaattagttaattgattgag |
496 |
Q |
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| T |
6371014 |
caagagttaaataaactagttaattgattgag |
6370983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 255 - 298
Target Start/End: Complemental strand, 6371217 - 6371174
Alignment:
| Q |
255 |
cactgtctcaaccttgtcttcaccgtttgtggatcatcatcttc |
298 |
Q |
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| T |
6371217 |
cactgtctcaaccttgtcttcaccgtttgtggatcatcatcttc |
6371174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 255 - 298
Target Start/End: Complemental strand, 33222186 - 33222143
Alignment:
| Q |
255 |
cactgtctcaaccttgtcttcaccgtttgtggatcatcatcttc |
298 |
Q |
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| T |
33222186 |
cactgtatcaaccttgtcttcaccgtttgttgatcatcatcttc |
33222143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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