View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13239_high_5 (Length: 356)
Name: NF13239_high_5
Description: NF13239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13239_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 10 - 341
Target Start/End: Original strand, 31410911 - 31411242
Alignment:
| Q |
10 |
gcagagataagagatccaaaaaagaatggtgctagggtttggcttggtacttatgtgactgaggaggaagcagctttggcttacgacaaagctgctttta |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31410911 |
gcagagataagagatccaaaaaagaatggtgctagggtttggcttggtacttatgtgactgaggaggaagcagctttggcttacgacaaagctgctttta |
31411010 |
T |
|
| Q |
110 |
agatgcgtggccgaaaggccaagcttaattttccccacctcattggctctgatgtgtttacaccagagccagagaaggaggtggttttgaaacgggaatc |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31411011 |
agatgcgtggccgaaaggccaagcttaattttccccacctcattggctctgatgtgtttacaccagagccagagaaggaggtggttttgaaacgggaatc |
31411110 |
T |
|
| Q |
210 |
accggagccttcttcatcggaggaaagttgtgagtcatcgtcaccaaggttaaagaggaggaggggcacggttgacctacttaacaaactagccaagaat |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31411111 |
accggagccttcttcatcggaggaaagttgtgagtcatcgtcaccaaggttaaagaggaggaggggcacggttgacctacttaacaaactagccaagaat |
31411210 |
T |
|
| Q |
310 |
agatgccaagctaaggtggttgaaattgaaac |
341 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
31411211 |
agatgccaagctaaggtggttgaaattgaaac |
31411242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 13 - 319
Target Start/End: Original strand, 31414875 - 31415187
Alignment:
| Q |
13 |
gagataagagatccaaaaaagaatggtgctagggtttggcttggtacttatgtgactgaggaggaagcagctttggcttacgacaaagctgcttttaaga |
112 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31414875 |
gagataagagatccaaaaaagaatggtgctagagtttggcttggaacgtatgtgactgaggaggaagcagctttggcttacgacaaagctgcttttaaga |
31414974 |
T |
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| Q |
113 |
tgcgtggccgaaaggccaagcttaattttccccacctcattggctctgatgtgtttacaccagagccagagaaggaggtggttttgaaacgggaatcacc |
212 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||| |||||||||||||||| |||||||||| |
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| T |
31414975 |
tgcgaggccgaaaggccaagcttaattttccccacctcattggctctgatgtgtctacatctgagccagagagggaggtggttttgaaaagggaatcacc |
31415074 |
T |
|
| Q |
213 |
ggagc------cttcttcatcggaggaaagttgtgagtcatcgtcaccaaggttaaagaggaggaggggcacggttgacctacttaacaaactagccaag |
306 |
Q |
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|||| ||||||||||||||| ||||||||||||| ||||||| |||| |||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
31415075 |
cgagccttcttcttcttcatcggagggaagttgtgagtcagtgtcaccagggttgaagaggaggaggggcatggttgacctacttaacaaattagccaag |
31415174 |
T |
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| Q |
307 |
aatagatgccaag |
319 |
Q |
| |
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|||||| |||||| |
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| T |
31415175 |
aatagaagccaag |
31415187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 10 - 340
Target Start/End: Original strand, 31407734 - 31408064
Alignment:
| Q |
10 |
gcagagataagagatccaaaaaagaatggtgctagggtttggcttggtacttatgtgactgaggaggaagcagctttggcttacgacaaagctgctttta |
109 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||| | |
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| T |
31407734 |
gcagagataagagacccaaaaaagaatggtgctagggtttggcttggtacttatgtgactgaggaggaagcaggttttgcttacgataaagctgctttca |
31407833 |
T |
|
| Q |
110 |
agatgcgtggccgaaaggccaagcttaattttccccacctcattggctctgatgtgtttacaccagagccagagaaggaggtggttttgaaacgggaatc |
209 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | | ||| || ||| | |||||| ||||||||||||||| |
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| T |
31407834 |
agatgcgtggccaaaaggccaagcttaattttccccacctcattggctctgatgtgtacatgtcggagtcaaagaggaaggtggctttgaaacgggaatc |
31407933 |
T |
|
| Q |
210 |
accggagc---cttcttcatcggaggaaagttgtgagtcatcgtcaccaaggttaaagaggaggaggggcacggttgacctacttaacaaactagccaag |
306 |
Q |
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||| |||| ||||||||||||| || ||||||||||||||||||||| | | |||||||||| ||| ||||||||||||||||||| |||||||| |
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| T |
31407934 |
accagagccttcttcttcatcggaagatagttgtgagtcatcgtcaccaggatcgaagaggagga---gcatggttgacctacttaacaaattagccaag |
31408030 |
T |
|
| Q |
307 |
aatagatgccaagctaaggtggttgaaattgaaa |
340 |
Q |
| |
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|||||| |||||| | |||||| |||| ||||| |
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| T |
31408031 |
aatagaagccaagtcatggtggtagaaaatgaaa |
31408064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 159
Target Start/End: Original strand, 1008593 - 1008742
Alignment:
| Q |
10 |
gcagagataagagatccaaaaaagaatggtgctagggtttggcttggtacttatgtgactgaggaggaagcagctttggcttacgacaaagctgctttta |
109 |
Q |
| |
|
||||||||||| |||||||| |||||||| ||||| ||||||||||| || || | ||||| || ||||| | ||||||||| || | ||| |||| | |
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| T |
1008593 |
gcagagataagggatccaaagaagaatggagctagagtttggcttggaacgtacgaaactgaagaagaagctggtttggcttatgatagagccactttca |
1008692 |
T |
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| Q |
110 |
agatgcgtggccgaaaggccaagcttaattttccccacctcattggctct |
159 |
Q |
| |
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|||| ||||| |||| |||||||| |||||||||||||| || |||||| |
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| T |
1008693 |
agatccgtggtagaaaagccaagctcaattttccccaccttatcggctct |
1008742 |
T |
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