View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13239_high_8 (Length: 290)
Name: NF13239_high_8
Description: NF13239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13239_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 10 - 275
Target Start/End: Complemental strand, 48753297 - 48753044
Alignment:
| Q |
10 |
aatatttctactgatttgtgtttattgcttgctttactgcttctctgttttgaggtatgcatcagtgattgtcacacaaagtacaaaccagtcaaataat |
109 |
Q |
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| T |
48753297 |
aatatttctactcatttgtgtttattgcttgctttactgcttctctgttttgaggtatgcatcagtgattgtcacacaaagtacaaaccagtcaaataat |
48753198 |
T |
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| Q |
110 |
agaataaacatgttacacgaccgaaacagaaagaagtggcaactgacaatgacacacaacactgaatgtt--aaagaaggaaagaaggagagcttagaat |
207 |
Q |
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| T |
48753197 |
agaataaacatgttacacgaccgaaacagaaagaagtggcaactgacaatgacacacaacactgaatgttaaaaagaagga---aaggagagcttagaat |
48753101 |
T |
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| Q |
208 |
tctaactcattatatacgtatgattttataacaaaattgtgattttatctgacatgtagcatattact |
275 |
Q |
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| T |
48753100 |
tctaactc-----------atgattttataccaaaattgtgattttatctgacatgtagcatattact |
48753044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 10 - 274
Target Start/End: Original strand, 52092423 - 52092686
Alignment:
| Q |
10 |
aatatttctactgatttgtgtttattgcttgctttactgcttctctgttttgaggtatgcatcagtgattgtcacacaaagtacaaaccagtcaaataat |
109 |
Q |
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| T |
52092423 |
aatatttctactaatttgtgtttattgcttg------tacttctctgttttgaggtatgcaacagtgattgtcacacaaagtacaaaccagtcaaataat |
52092516 |
T |
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| Q |
110 |
agaa-taaacatgttacacga--------ccgaaacaga--aagaagtggcaactgacaatgacacacaacactgaatgttaaagaaggaaagaaggaga |
198 |
Q |
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| T |
52092517 |
agaattaaacatgttacaagaagtgtattggaaaacataataaataatggcaactgacaatgacacacaacactgaatgtt--------aaagaaggaga |
52092608 |
T |
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| Q |
199 |
gcttagaat--tctaactcattatatacgtatgattttataacaaaattgtgattttatctgacatgtagcatattac |
274 |
Q |
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| T |
52092609 |
gcttagaattctctaactcatgatttacgtatgattctataccaaaattgtgattttatctcacatgtagcatattac |
52092686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 73
Target Start/End: Complemental strand, 33575817 - 33575759
Alignment:
| Q |
14 |
tttctactgatttgtgtttattgcttgctttactgcttctctgttttgaggtatgcatca |
73 |
Q |
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| T |
33575817 |
tttctactcatttgtgtttattgcttg-tttactacttctctgttttgaggtctgcatca |
33575759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 124
Target Start/End: Complemental strand, 38462727 - 38462695
Alignment:
| Q |
92 |
acaaaccagtcaaataatagaataaacatgtta |
124 |
Q |
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| T |
38462727 |
acaaaacagtcaaataatagaataaacatgtta |
38462695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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