View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13239_low_1 (Length: 961)

Name: NF13239_low_1
Description: NF13239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13239_low_1
NF13239_low_1
[»] chr1 (41 HSPs)
chr1 (16-954)||(6601497-6602435)
chr1 (322-939)||(6592257-6592879)
chr1 (412-817)||(2011709-2012114)
chr1 (412-808)||(2010299-2010695)
chr1 (412-570)||(2006201-2006359)
chr1 (419-664)||(3361472-3361720)
chr1 (419-665)||(3372444-3372693)
chr1 (717-936)||(3361788-3362007)
chr1 (424-663)||(3349141-3349383)
chr1 (412-672)||(2019518-2019772)
chr1 (474-663)||(2948497-2948689)
chr1 (474-663)||(3340317-3340509)
chr1 (412-556)||(3218662-3218806)
chr1 (698-825)||(2948317-2948444)
chr1 (65-168)||(15579459-15579562)
chr1 (407-667)||(4323139-4323402)
chr1 (776-954)||(2006580-2006758)
chr1 (593-654)||(3378665-3378726)
chr1 (474-657)||(9818945-9819131)
chr1 (407-557)||(4335151-4335301)
chr1 (67-229)||(10439665-10439827)
chr1 (67-176)||(44031981-44032090)
chr1 (67-176)||(44422678-44422787)
chr1 (601-673)||(3218539-3218611)
chr1 (129-225)||(32515374-32515470)
chr1 (770-825)||(9818759-9818814)
chr1 (67-168)||(6292472-6292573)
chr1 (67-176)||(25479560-25479669)
chr1 (616-664)||(2006414-2006462)
chr1 (69-161)||(4549211-4549303)
chr1 (88-168)||(27140478-27140558)
chr1 (68-160)||(33722399-33722491)
chr1 (67-122)||(4363668-4363723)
chr1 (129-168)||(28689442-28689481)
chr1 (772-826)||(3340636-3340690)
chr1 (698-756)||(3349436-3349494)
chr1 (67-165)||(12477280-12477378)
chr1 (133-227)||(15581299-15581393)
chr1 (75-168)||(33759557-33759650)
chr1 (67-148)||(34179882-34179963)
chr1 (131-176)||(38170672-38170717)
[»] chr2 (16 HSPs)
chr2 (419-570)||(20934214-20934365)
chr2 (419-664)||(39273803-39274051)
chr2 (412-672)||(20923224-20923487)
chr2 (475-667)||(20952814-20953003)
chr2 (702-940)||(20923532-20923770)
chr2 (473-672)||(20926883-20927086)
chr2 (69-174)||(680484-680589)
chr2 (72-161)||(15866665-15866754)
chr2 (67-168)||(43141850-43141951)
chr2 (67-175)||(40158697-40158805)
chr2 (90-174)||(41817170-41817254)
chr2 (73-176)||(5759557-5759660)
chr2 (129-175)||(787373-787419)
chr2 (199-229)||(1830150-1830180)
chr2 (74-176)||(12215793-12215895)
chr2 (68-113)||(22681230-22681275)
[»] chr4 (12 HSPs)
chr4 (706-889)||(21237594-21237777)
chr4 (434-654)||(21237304-21237527)
chr4 (67-161)||(54325034-54325128)
chr4 (129-176)||(3176086-3176133)
chr4 (129-172)||(50800016-50800059)
chr4 (65-167)||(30207562-30207664)
chr4 (69-147)||(51630092-51630170)
chr4 (81-162)||(6978958-6979039)
chr4 (71-168)||(8422830-8422926)
chr4 (131-168)||(19304969-19305006)
chr4 (67-168)||(23819068-23819169)
chr4 (71-168)||(29263353-29263450)
[»] chr5 (15 HSPs)
chr5 (474-663)||(17969670-17969862)
chr5 (702-829)||(17969916-17970043)
chr5 (67-177)||(10272412-10272522)
chr5 (68-164)||(32408586-32408682)
chr5 (69-148)||(16944993-16945072)
chr5 (69-168)||(41957441-41957540)
chr5 (131-176)||(18700427-18700472)
chr5 (65-153)||(12975324-12975411)
chr5 (89-173)||(17258868-17258952)
chr5 (73-176)||(13604831-13604934)
chr5 (67-174)||(16889714-16889821)
chr5 (129-168)||(17369429-17369468)
chr5 (199-229)||(1084068-1084098)
chr5 (129-175)||(10280582-10280627)
chr5 (88-161)||(11707055-11707128)
[»] chr6 (12 HSPs)
chr6 (67-162)||(281844-281939)
chr6 (69-153)||(31671079-31671163)
chr6 (129-168)||(7785734-7785773)
chr6 (71-230)||(28088151-28088309)
chr6 (67-125)||(18264308-18264366)
chr6 (67-176)||(3155155-3155263)
chr6 (107-168)||(34939763-34939824)
chr6 (75-174)||(2027390-2027489)
chr6 (129-176)||(20377902-20377949)
chr6 (130-229)||(30863288-30863387)
chr6 (67-120)||(22691558-22691611)
chr6 (67-100)||(22742345-22742378)
[»] chr3 (11 HSPs)
chr3 (73-175)||(20502051-20502153)
chr3 (63-124)||(33306757-33306818)
chr3 (129-173)||(30923883-30923927)
chr3 (107-171)||(36200115-36200179)
chr3 (129-176)||(42817204-42817251)
chr3 (65-164)||(52440656-52440755)
chr3 (129-175)||(41724253-41724299)
chr3 (97-174)||(9279310-9279387)
chr3 (73-158)||(16990161-16990246)
chr3 (107-176)||(27290883-27290952)
chr3 (129-170)||(42039203-42039244)
[»] chr8 (8 HSPs)
chr8 (129-229)||(6950363-6950463)
chr8 (88-168)||(11188145-11188225)
chr8 (88-176)||(11569439-11569527)
chr8 (87-227)||(30191072-30191212)
chr8 (129-176)||(30259155-30259202)
chr8 (69-175)||(4558779-4558885)
chr8 (71-100)||(5349651-5349680)
chr8 (87-168)||(42215296-42215377)
[»] scaffold0024 (1 HSPs)
scaffold0024 (67-176)||(27555-27664)
[»] scaffold0311 (1 HSPs)
scaffold0311 (129-176)||(10599-10646)
[»] chr7 (6 HSPs)
chr7 (129-176)||(33894668-33894715)
chr7 (86-164)||(6552286-6552364)
chr7 (67-112)||(5369737-5369782)
chr7 (129-226)||(12242285-12242382)
chr7 (139-176)||(33645943-33645980)
chr7 (68-113)||(38010694-38010739)
[»] scaffold0147 (1 HSPs)
scaffold0147 (130-175)||(12687-12732)


Alignment Details
Target: chr1 (Bit Score: 907; Significance: 0; HSPs: 41)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 907; E-Value: 0
Query Start/End: Original strand, 16 - 954
Target Start/End: Complemental strand, 6602435 - 6601497
Alignment:
Q  16 aaacaactcaatgaatcacttatagatataagcacttacaacaagagataatcaaattgttttcatatatgctataagctattttcctaaactatcctgt 115  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  6602435 aaacaactcaatgaatcacttatagctataagcacttacaacaagagataatcaaattgttttcatatatgctataagctattttcataaactatcccgt 6602336  T
Q  116 agagtttatgtgcataagctgataacaacttatagacatgtcataagctgtttacataagcaatgccaaagattcttataagagcttatgtcagtaaata 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6602335 agagtttatgtgcataagctgataacaacttatagacatgtcataagctgtttacataagcaatgccaaagattcttataagagcttatgtcagtaaata 6602236  T
Q  216 aactcaaataagtctgtagtttttatgcaaattaatgcctttatagaagagataaacaatacttgtaactatagcattttgttatttgaattcagagaag 315  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6602235 aactcaaataagtcggtagtttttatgcaaattaatgcctttatagaagagataaacaatacttgtaactatagcattttgttatttgaattcagagaag 6602136  T
Q  316 ttaaaataacctattttgttttctgattcttggatcttttgtctgaatatatctaaagagaagggaacaatcccagtctccttgcgtaacggatgcggag 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6602135 ttaaaataacctattttgttttctgattcttggatcttttgtctgaatatatctaaagagaagggaacaatcccagtctccttgcgtaacggatgcggag 6602036  T
Q  416 cccgatagaattagtagtttaccaggtcatataatagaccaaattctctcaattttaccaattaaggaagcagtgagaacaagtattttatcaaccaaat 515  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6602035 cccgatagaattagtagtttaccaggtcatataatagaccaaattctctcaattttgccaattaaggaagcagtgagaacaagtattttatcaaccaaat 6601936  T
Q  516 ggaggtacaaatgggccacacttccaaatcttgtgtttgatagccaatgtatctccgacacttctgaagaccttttagttatcaagagcaagctttcgag 615  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  6601935 ggaggtacaaatgggccacacttccaaatcttgtgtttgatagccaatgtatctccgacacttctgaagaccttttagttatcaagagcaaactttcgag 6601836  T
Q  616 aattattgatcatgtacttttactccattctgggccaatcaaaaagttcaagctctcccatcgcgagctcagtggagtgaccgatattgatcgatggact 715  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  6601835 aattattgatcatgtacttttactccattctgggccaatcaaaaagttcaagctctcccatcgcgagctcattggagtgaccgatattgatcgatggact 6601736  T
Q  716 cttcatctaaccagaaggcctgttaaagagtttgtgctggaaatctggaaagggcaacgctataaaataccttcatgcttattttcttgtcaaggtttac 815  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6601735 cttcatctaaccagaaggcctgttaaagagtttgtgctggaaatctggaaagggcaacgctataaaataccttcatgcttattttcttgtcaaggtttac 6601636  T
Q  816 atcatttagaattatttaactgttggcttataccaccatcaacatttcaaggattcaggaacttgaagagtcttgatctgcaacatgttaccttgtctca 915  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6601635 atcatttagaattatttaactgttggcttataccaccatcaacatttcaaggattcaggaacttgaagagtcttgatctgcaacatgttaccttgtctca 6601536  T
Q  916 agattcttttgaaaacttgatatctacttgccctttgct 954  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  6601535 agatgcttttgaaaacttgatatctacttgccctttgct 6601497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 322 - 939
Target Start/End: Complemental strand, 6592879 - 6592257
Alignment:
Q  322 taacctattttgttttctgattcttggatcttttgtctgaatatatcta--aagagaagggaacaatcccagtctccttgcgtaacggatgcggagcccg 419  Q
    ||||||| |||||||||||| | |||||  |||||||||| ||||||||  |||||||| ||||| |||||||||||||||||| | || | ||||||||    
T  6592879 taacctaatttgttttctgaatattggagtttttgtctgactatatctatgaagagaagagaacagtcccagtctccttgcgtatcagacgaggagcccg 6592780  T
Q  420 atagaattagtagtttaccaggtcatataatagaccaaattctctcaattttaccaattaaggaagcagtgagaacaagtattttatcaaccaaatggag 519  Q
    ||||| |||||||||||||||| ||| |||||||||| |||||||| ||||| ||||||||||||||||  ||||||||||||||||| ||||| |||||    
T  6592779 atagagttagtagtttaccaggccatgtaatagaccatattctctcgattttgccaattaaggaagcagccagaacaagtattttatctaccaactggag 6592680  T
Q  520 gtacaaatgggccacacttccaaatcttgtgtttgatagccaatgtatctccgacacttctgaagaccttttagttatcaagagcaagctttcgagaatt 619  Q
    |||||||||| |||||||||||||||||||||||||||   ||||| ||||||| |||||| ||||||||||||||||||||||||||||||| ||||||    
T  6592679 gtacaaatggaccacacttccaaatcttgtgtttgataatgaatgtctctccgaaacttctaaagaccttttagttatcaagagcaagctttcaagaatt 6592580  T
Q  620 attgatcatgtacttttactccattctgggccaatcaaaaagttcaagctctcccatcgcgagctcagtggagtgaccgatattgatcgatggactcttc 719  Q
    |||||||||||||||||||||| |||||| |||||||||||||||||||||||   ||| || | || ||  || || ||||||||||| |||||||||     
T  6592579 attgatcatgtacttttactccgttctggaccaatcaaaaagttcaagctctc---tcgggatcacattgatgtcactgatattgatcggtggactcttt 6592483  T
Q  720 atctaaccagaaggcctgttaaagagtttgtgctggaaatctggaa------agggcaacgctataaaataccttcatgcttattttcttgtcaaggttt 813  Q
    ||||||||||| |||  ||||||||||||||| | |||||||||||      ||  ||||||||||||||||||||||| ||||||||||||||| ||||    
T  6592482 atctaaccagatggcaggttaaagagtttgtgttagaaatctggaaaaacccagaccaacgctataaaataccttcatggttattttcttgtcaaagttt 6592383  T
Q  814 acatcatttagaattatttaactgttggcttataccaccatcaacatttcaaggattcaggaacttgaagagtcttgatctgcaacatgttaccttgtct 913  Q
     |||||||||||||||||  | || ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||| ||| ||    
T  6592382 gcatcatttagaattattagaatgctggcttataccaccatcaacatttcaaggtttcaagaacttgaagagtcttgatctgcaatatgttacattgact 6592283  T
Q  914 caagattcttttgaaaacttgatatc 939  Q
     ||||| || |||||||||| |||||    
T  6592282 aaagatgctgttgaaaacttaatatc 6592257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 8e-36
Query Start/End: Original strand, 412 - 817
Target Start/End: Original strand, 2011709 - 2012114
Alignment:
Q  412 ggagcccgatagaattagtagtttaccaggtcatataatagaccaaattctctcaattttaccaattaaggaagcagtgagaacaagtattttatcaacc 511  Q
    |||||| ||||||||||||  |||||||||| || |||||||||  ||| | |||   || ||||||| ||| |  |||||||||||||||||||||| |    
T  2011709 ggagccggatagaattagtgttttaccaggtgatgtaatagaccggattttgtcatgcttgccaattagggatgttgtgagaacaagtattttatcaaac 2011808  T
Q  512 aaatggaggtacaaatgggccacacttccaaatcttgtgtttgatagccaatgtatctccgacacttctgaagaccttttagttatcaagagcaagcttt 611  Q
    ||||||||||||||||||  |||| | ||||||||||||||||||   |||||| | || |  || |||||| ||| |  || ||||||||| |||||||    
T  2011809 aaatggaggtacaaatggatcacaataccaaatcttgtgtttgattcacaatgtgtgtctgcaacatctgaacaccctgcagctatcaagagaaagcttt 2011908  T
Q  612 cgagaattattgatcatgtacttttactccattctgggccaatcaaaaagttcaagctctcccatcgcgagctcagtggagtgaccgatattgatcgatg 711  Q
     |  |||||| || ||||||||||||||  ||| |||||||||||| |||||||||||||| | |   |  |||| | | | ||| | | ||||| | ||    
T  2011909 tggcaattatcgaccatgtacttttactttattatgggccaatcaacaagttcaagctctctccttttggtctcattagtgcgactgctcttgataggtg 2012008  T
Q  712 gactcttcatctaaccagaaggcctgttaaagagtttgtgctggaaatctggaaagggcaacgctataaaataccttcatgcttattttcttgtcaaggt 811  Q
    || | ||||||||||||||||| || | |||||| ||||||||| | | | || ||| |||   ||||| |||||||  |||||||||||||||||| |     
T  2012009 gatttttcatctaaccagaaggtctatcaaagagcttgtgctgggattatcgataggacaatcatataagataccttggtgcttattttcttgtcaaagc 2012108  T
Q  812 ttacat 817  Q
    ||||||    
T  2012109 ttacat 2012114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 412 - 808
Target Start/End: Original strand, 2010299 - 2010695
Alignment:
Q  412 ggagcccgatagaattagtagtttaccaggtcatataatagaccaaattctctcaattttaccaattaaggaagcagtgagaacaagtattttatcaacc 511  Q
    |||||| |||||||||||| ||||||| ||| || ||||||||| |||| | | |   || || |||| ||| |  |||||||||||| ||||||  | |    
T  2010299 ggagccggatagaattagttgtttaccgggtgatgtaatagaccgaattttgttacgcttgcctattagggacgttgtgagaacaagtgttttatgcaac 2010398  T
Q  512 aaatggaggtacaaatgggccacacttccaaatcttgtgtttgatagccaatgtatctccgacacttctgaagaccttttagttatcaagagcaagcttt 611  Q
    |||||||||||||||||| ||||| | |||||||||||||||||||  |||||| |||| |  || ||  |   || |||||||||| |||| |||||||    
T  2010399 aaatggaggtacaaatggaccacaataccaaatcttgtgtttgataaacaatgtgtctctgcaacatcccatcgccctttagttatcgagagaaagcttt 2010498  T
Q  612 cgagaattattgatcatgtacttttactccattctgggccaatcaaaaagttcaagctctcccatcgcgagctcagtggagtgaccgatattgatcgatg 711  Q
     |  ||||||||||||||||||||||||  |||| ||||||||||| ||||||||||||||  || | |   | |   | ||||| | | ||||| | |     
T  2010499 tggcaattattgatcatgtacttttactttattccgggccaatcaacaagttcaagctctctgattgtggtgtgatcagtgtgactgcttttgataggta 2010598  T
Q  712 gactcttcatctaaccagaaggcctgttaaagagtttgtgctggaaatctggaaagggcaacgctataaaataccttcatgcttattttcttgtcaa 808  Q
    || | ||||||||||||||||| || | ||| || ||||| | ||||||| |||||| ||||  ||||| |||||||  ||||||||||||||||||    
T  2010599 gatttttcatctaaccagaaggtctatcaaaaagcttgtgattgaaatctcgaaaggacaaccgtataagataccttggtgcttattttcttgtcaa 2010695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 412 - 570
Target Start/End: Original strand, 2006201 - 2006359
Alignment:
Q  412 ggagcccgatagaattagtagtttaccaggtcatataatagaccaaattctctcaattttaccaattaaggaagcagtgagaacaagtattttatcaacc 511  Q
    |||||| ||||||||||||  ||||| |||| || |||||||| | ||||| |||   || ||||||| |||||| |||||||||||| ||||||| | |    
T  2006201 ggagccggatagaattagttatttactaggtgatgtaatagacaagattctgtcacacttgccaattagggaagctgtgagaacaagtgttttatccaac 2006300  T
Q  512 aaatggaggtacaaatgggccacacttccaaatcttgtgtttgatagccaatgtatctc 570  Q
    |||||||||||||||||||||||| | |||||||||||||||||||  |||||| ||||    
T  2006301 aaatggaggtacaaatgggccacaataccaaatcttgtgtttgataaacaatgtgtctc 2006359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 419 - 664
Target Start/End: Original strand, 3361472 - 3361720
Alignment:
Q  419 gatagaattagtagtttaccaggtcatataatagaccaaattctctcaattttaccaattaaggaagcagtgagaacaagtattttatcaaccaaatgga 518  Q
    |||||||||||| | ||||||| |||  |||||||||| ||  | |||   || ||||| ||||||||||||||||||||||||||||| | ||||||||    
T  3361472 gatagaattagttgcttaccagatcacgtaatagaccagatcttgtcatacttgccaatcaaggaagcagtgagaacaagtattttatccagcaaatgga 3361571  T
Q  519 ggtacaaatgggccacacttccaaatcttgtgtttgatagccaatgtatctccgacac---ttctgaagaccttttagttatcaagagcaagctttcgag 615  Q
    |  ||||||||  ||| || ||||||||||| |||||||  || || ||||| || ||   |||  |||||| ||  |||||||| | |||| ||| |||    
T  3361572 gtaacaaatggtacacgctaccaaatcttgtatttgataaacattgcatctctgatacagattcccaagacccttcggttatcaataacaagtttttgag 3361671  T
Q  616 aattattgatcatgtacttttactccattctgggccaatcaaaaagttc 664  Q
    |||| ||||||||||||||||||| |||| |||||||||||| ||||||    
T  3361672 aattgttgatcatgtacttttacttcattatgggccaatcaacaagttc 3361720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 419 - 665
Target Start/End: Original strand, 3372444 - 3372693
Alignment:
Q  419 gatagaattagtagtttaccaggtcatataatagaccaaattctctcaattttaccaattaaggaagcagtgagaacaagtattttatcaaccaaatgga 518  Q
    |||||||||||| | |||||||||||| ||||||| || ||||||||| |  | |||||||| |||||||||||||||||| ||||||| | ||  ||||    
T  3372444 gatagaattagttgcttaccaggtcatgtaatagatcagattctctcactcatgccaattaaagaagcagtgagaacaagtgttttatccagcagctgga 3372543  T
Q  519 ggtacaaatgggccacacttccaaatcttgtgtttgatagccaatgtatctccg--aca-cttctgaagaccttttagttatcaagagcaagctttcgag 615  Q
    || ||||||||  |||||| ||||||||||||||| | |  || || ||||| |   || ||||  || ||  || ||||||||| | |||| ||| |||    
T  3372544 ggaacaaatggtacacactaccaaatcttgtgtttaacaaacattgcatctctgttgcagcttccaaatacacttcagttatcaataacaagtttttgag 3372643  T
Q  616 aattattgatcatgtacttttactccattctgggccaatcaaaaagttca 665  Q
    |||| ||||||||||||||||||  |||||||| |||||||| |||||||    
T  3372644 aattgttgatcatgtacttttacaacattctggtccaatcaacaagttca 3372693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 717 - 936
Target Start/End: Original strand, 3361788 - 3362007
Alignment:
Q  717 ttcatctaaccagaaggcctgttaaagagtttgtgctggaaatctggaaagggcaacgctataaaataccttcatgcttattttcttgtcaaggtttaca 816  Q
    |||| |||||| |||||||| ||||||||||||||||| | || |||  ||   |||||||||| || ||||  |||||||| ||||||||| |||||||    
T  3361788 ttcacctaacccgaaggcctattaaagagtttgtgctgcacatttggttagacgaacgctataagatcccttggtgcttattctcttgtcaaagtttaca 3361887  T
Q  817 tcatttagaattatttaactgttggcttataccaccatcaacatttcaaggattcaggaacttgaagagtcttgatctgcaacatgttaccttgtctcaa 916  Q
    |||||||||||||     ||||||||||| ||| ||| |||| ||| |||| |||| ||||||||| ||||||||  ||   || |||||  || |||||    
T  3361888 tcatttagaattaaaatgctgttggcttaaacctccaacaacgtttgaaggcttcaagaacttgaaaagtcttgaattgagtcacgttacaatgactcaa 3361987  T
Q  917 gattcttttgaaaacttgat 936  Q
    ||||||||||||||| ||||    
T  3361988 gattcttttgaaaacatgat 3362007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 424 - 663
Target Start/End: Original strand, 3349141 - 3349383
Alignment:
Q  424 aattagtagtttaccaggtcatataatagaccaaattctctcaattttaccaattaaggaagcagtgagaacaagtattttatcaaccaaatggaggtac 523  Q
    ||||||| | ||||||| |||| | ||||| || |||||||||   ||  ||||||||||| |||| ||||||||| | ||||| | | |||||||| |     
T  3349141 aattagttgcttaccagatcatcttatagagcagattctctcacacttgacaattaaggaatcagtaagaacaagtgtgttatcgagcgaatggaggaag 3349240  T
Q  524 aaatgggccacacttccaaatcttgtgtttgatagccaatgt--atctcc-gacacttctgaagaccttttagttatcaagagcaagctttcgagaatta 620  Q
    |||||| ||||||| ||| |||||||||||||||| | ||||  |||| | || |||||   | | | || ||||||  |||||||| ||| ||||||||    
T  3349241 aaatggtccacactaccagatcttgtgtttgatagtctatgtgtatctactgaaacttccctaaaaccttcagttattgagagcaagtttttgagaatta 3349340  T
Q  621 ttgatcatgtacttttactccattctgggccaatcaaaaagtt 663  Q
    ||||||||||||||||||| |||||||||| |||||| |||||    
T  3349341 ttgatcatgtacttttacttcattctgggctaatcaacaagtt 3349383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 412 - 672
Target Start/End: Original strand, 2019518 - 2019772
Alignment:
Q  412 ggagcccgatagaattagtagtttaccaggtcatataatagaccaaattctctcaattttaccaattaaggaagcagtgagaacaagtattttatcaacc 511  Q
    |||||| |||||||||||| ||||||| ||| || ||||||||| |||| | | |   || || |||| ||| || |||||||||||| ||||||| | |    
T  2019518 ggagccggatagaattagttgtttaccgggtgatgtaatagaccgaattttgttacgcttgcctattagggacgctgtgagaacaagtgttttatccaac 2019617  T
Q  512 aaatggaggtacaaatgggccacacttccaaatcttgtgtttgatagccaatgtatctccgacacttctgaagaccttttagttatcaagagcaagcttt 611  Q
    |||||||||||||||||||||||| | ||||||||||| ||| |||  ||| || |||| |  ||      || || ||| ||||||    | |||||||    
T  2019618 aaatggaggtacaaatgggccacaatgccaaatcttgtatttaataaacaacgtgtctctgcaac------agccccttttgttatcggaggaaagcttt 2019711  T
Q  612 cgagaattattgatcatgtacttttactccattctgggccaatcaaaaagttcaagctctc 672  Q
     |  ||||||||||||||||||||||||  |||| ||||||||||| ||||||||||||||    
T  2019712 tggcaattattgatcatgtacttttactttattccgggccaatcaacaagttcaagctctc 2019772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 474 - 663
Target Start/End: Complemental strand, 2948689 - 2948497
Alignment:
Q  474 caattaaggaagcagtgagaacaagtattttatcaaccaaatggaggtacaaatgggccacacttccaaatcttgtgtttgatagccaatgt--atctcc 571  Q
    |||||||||||||||| | ||||||| | ||||| | | |||||||| | |||||| ||||||  ||| |||||||||||||||| | ||||  |||| |    
T  2948689 caattaaggaagcagtaacaacaagtgtgttatcgagcgaatggaggaataaatggtccacacaaccagatcttgtgtttgatagtcgatgtgtatctac 2948590  T
Q  572 gacactt-ctgaagaccttttagttatcaagagcaagctttcgagaattattgatcatgtacttttactccattctgggccaatcaaaaagtt 663  Q
      || || |  |||||| || ||||||  |||||||| ||| ||||||| ||||||||||||||||||| ||||||||||||||||| |||||    
T  2948589 tgcaatttccaaagacccttcagttattgagagcaagtttttgagaattgttgatcatgtacttttacttcattctgggccaatcaacaagtt 2948497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 474 - 663
Target Start/End: Original strand, 3340317 - 3340509
Alignment:
Q  474 caattaaggaagcagtgagaacaagtattttatcaaccaaatggaggtacaaatgggccacacttccaaatcttgtgtttgatagccaatgt--atctcc 571  Q
    |||||||||||||||| ||||||||| ||||||| | ||| |||||  | |||||| ||||  | ||| |||||||||||||| |  |||||  |||| |    
T  3340317 caattaaggaagcagtaagaacaagtgttttatcgagcaattggagaaagaaatggtccactttaccagatcttgtgtttgatcgtgaatgtgtatctac 3340416  T
Q  572 -gacacttctgaagaccttttagttatcaagagcaagctttcgagaattattgatcatgtacttttactccattctgggccaatcaaaaagtt 663  Q
     || |||||  || ||| || ||||||  |||||||| |||  |||||| ||||||||||||||||||| ||||||||||||||||| |||||    
T  3340417 tgaaacttccaaacacccttcagttattgagagcaagtttttaagaattgttgatcatgtacttttacttcattctgggccaatcaacaagtt 3340509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 412 - 556
Target Start/End: Complemental strand, 3218806 - 3218662
Alignment:
Q  412 ggagcccgatagaattagtagtttaccaggtcatataatagaccaaattctctcaattttaccaattaaggaagcagtgagaacaagtattttatcaacc 511  Q
    |||||| |||||||||||| | |||||||||||| ||||||| || |||||||||   || ||||||| ||||||||||| ||||||| |||| || |      
T  3218806 ggagccggatagaattagttgcttaccaggtcatgtaatagatcagattctctcatacttgccaattagggaagcagtgaaaacaagtgttttgtccagt 3218707  T
Q  512 aaatggaggtacaaatgggccacacttccaaatcttgtgtttgat 556  Q
     |||||||| | ||||||  |||||| |||||| |||||||||||    
T  3218706 gaatggaggaataaatggcacacactaccaaatattgtgtttgat 3218662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 698 - 825
Target Start/End: Complemental strand, 2948444 - 2948317
Alignment:
Q  698 gatattgatcgatggactcttcatctaaccagaaggcctgttaaagagtttgtgctggaaatctggaaagggcaacgctataaaataccttcatgcttat 797  Q
    ||||||||||| |||| || |||||||||| |||||| | |||||||||||||| |||| || ||    |  ||||||||||| |||||||||| |||||    
T  2948444 gatattgatcggtggattcgtcatctaaccggaaggcatattaaagagtttgtgttggacatttgttttgatcaacgctataagataccttcatccttat 2948345  T
Q  798 tttcttgtcaaggtttacatcatttaga 825  Q
    | || || ||||||||||||||||||||    
T  2948344 tctcctgccaaggtttacatcatttaga 2948317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 65 - 168
Target Start/End: Original strand, 15579459 - 15579562
Alignment:
Q  65 aatcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagct 164  Q
    ||||||||||||||||| || |||||||||| || || ||| ||||| ||| |||||||||   ||||||||| |||||||||| ||||||||||||| |    
T  15579459 aatcaaattgttttcatgtaagctataagctgttctcgtaagctatcatgttgagtttatggaaataagctgagaacaacttatggacatgtcataagtt 15579558  T
Q  165 gttt 168  Q
    ||||    
T  15579559 gttt 15579562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 407 - 667
Target Start/End: Complemental strand, 4323402 - 4323139
Alignment:
Q  407 gatgcggagcccgatagaattagtagtttaccaggtcatataatagaccaaattctctcaattttaccaattaaggaagcagtgagaacaagtattttat 506  Q
    |||||||| || |||||||||||| | || ||||||||| ||| ||| || ||| | ||    || || |||| ||| ||||||||||||||| |||| |    
T  4323402 gatgcggaaccggatagaattagttggttgccaggtcatgtaacagatcagattatgtcttacttgccgattagggacgcagtgagaacaagtgttttgt 4323303  T
Q  507 caaccaaatggaggtacaaatgggccacacttccaaatcttgtgtttgatagccaatgtatctccg---acacttctgaagaccttttagttatcaagag 603  Q
    | |  || |||||| | ||||||   |||||||||||||||||| ||||||| |||||| | || |   |  ||||  |||||| |||||||||  ||      
T  4323302 cgaggaattggaggaaaaaatggtatacacttccaaatcttgtgcttgatagacaatgtgtgtctgctgaagcttcccaagaccctttagttattgagcc 4323203  T
Q  604 caagctttcgagaattattgatcatgtacttttactccattctgggccaatcaaaaagttcaag 667  Q
    |||| |||||| |||  ||||||||||||||||||| ||||||||||||||||| | |||||||    
T  4323202 caagttttcgaaaatggttgatcatgtacttttacttcattctgggccaatcaacatgttcaag 4323139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 776 - 954
Target Start/End: Original strand, 2006580 - 2006758
Alignment:
Q  776 tataaaataccttcatgcttattttcttgtcaaggtttacatcatttagaattatttaactgttggcttataccaccatcaacatttcaaggattcagga 875  Q
    ||||| |||||||  |||||||||||||||||| ||||||||||| ||  ||||| | | |||| ||||| ||| ||||| ||  || |||| || | ||    
T  2006580 tataagataccttggtgcttattttcttgtcaaagtttacatcatctaacattatattattgtttgcttaaacctccatcgacgattgaaggcttgaaga 2006679  T
Q  876 acttgaagagtcttgatctgcaacatgttaccttgtctcaagattcttttgaaaacttgatatctacttgccctttgct 954  Q
    |||| || ||||||||| || | ||||||| | |||||||  || ||||||| || |||||||||| ||||||| ||||    
T  2006680 acttaaaaagtcttgatttggatcatgttagcatgtctcagtatgcttttgagaatttgatatctagttgccctctgct 2006758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 593 - 654
Target Start/End: Original strand, 3378665 - 3378726
Alignment:
Q  593 gttatcaagagcaagctttcgagaattattgatcatgtacttttactccattctgggccaat 654  Q
    |||||| |||||||| ||| ||||||||| ||||||||||||||||| ||||||||||||||    
T  3378665 gttatcgagagcaagtttttgagaattatcgatcatgtacttttacttcattctgggccaat 3378726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 474 - 657
Target Start/End: Complemental strand, 9819131 - 9818945
Alignment:
Q  474 caattaaggaagcagtgagaacaagtattttatcaaccaaatggaggtacaaatgggccacacttccaaatcttgtgtttgatagccaatgt--atctcc 571  Q
    |||||||||||||||| ||||||||| | ||||| | | |||  ||| | |||||| ||||||  ||| |||||||||||||||| | ||||  |||| |    
T  9819131 caattaaggaagcagtaagaacaagtttgttatcgagcgaatacaggaagaaatggtccacacaaccagatcttgtgtttgatagtcgatgtgtatctac 9819032  T
Q  572 gaca-cttctgaagaccttttagttatcaagagcaagctttcgagaattattgatcatgtacttttactccattctgggccaatcaa 657  Q
    | || | || ||| ||| ||  ||| |  |||| ||| ||| ||||||||||||||||||||||||||| ||||| |||||||||||    
T  9819031 ggcaacctccgaaaacccttcggttgttgagagaaagtttttgagaattattgatcatgtacttttacttcattccgggccaatcaa 9818945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 407 - 557
Target Start/End: Complemental strand, 4335301 - 4335151
Alignment:
Q  407 gatgcggagcccgatagaattagtagtttaccaggtcatataatagaccaaattctctcaattttaccaattaaggaagcagtgagaacaagtattttat 506  Q
    |||||||| || |||||||||||| | |||||||||||| |||||||||| ||| | ||   ||| || |||| ||| || |||||||||||| |||| |    
T  4335301 gatgcggaaccggatagaattagttggttaccaggtcatgtaatagaccagattatgtcttatttgccgattagggacgcggtgagaacaagtgttttgt 4335202  T
Q  507 caaccaaatggaggtacaaatgggccacacttccaaatcttgtgtttgata 557  Q
    | |  || |||||| | ||||||   ||||||||||||||||| |||||||    
T  4335201 cgaggaattggaggaaaaaatggtatacacttccaaatcttgtatttgata 4335151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 229
Target Start/End: Original strand, 10439665 - 10439827
Alignment:
Q  67 tcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgt 166  Q
    ||||||| |||||||||| ||||| |||||| |||  ||||||||||| ||||||||||   ||||||||| | ||  |||| |||||||||||   |||    
T  10439665 tcaaattattttcatataagctatcagctatattcaaaaactatcctggagagtttatggaaataagctgaaagcagattatggacatgtcatagtttgt 10439764  T
Q  167 ttacataagcaatgccaaagattcttataagagcttatgtcagtaaataaactcaaataagtc 229  Q
    || |||||||  | ||||| | ||| | |||| |||||| |  ||||||| ||||||||||||    
T  10439765 tttcataagctctcccaaatagtctcacaagatcttatggccataaataagctcaaataagtc 10439827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 67 - 176
Target Start/End: Complemental strand, 44032090 - 44031981
Alignment:
Q  67 tcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgt 166  Q
    |||||||||||||||||| ||||||| |||||||| |||  |||| || |||| |||||   || |||||| || | ||||| |||||||||| |||||     
T  44032090 tcaaattgttttcatataagctataaactattttcttaagttatcttgaagagcttatggaaattagctgaaaatagcttatggacatgtcattagctgc 44031991  T
Q  167 ttacataagc 176  Q
    ||||||||||    
T  44031990 ttacataagc 44031981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 67 - 176
Target Start/End: Original strand, 44422678 - 44422787
Alignment:
Q  67 tcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgt 166  Q
    ||||| |||||||||||| |||||||||||||||  ||| |||||||| |||| |||||   ||||||||    || ||||| ||||||||||||||| |    
T  44422678 tcaaactgttttcatataagctataagctatttttataagctatcctggagagcttatgaaaataagctgtagtcagcttatggacatgtcataagctat 44422777  T
Q  167 ttacataagc 176  Q
    || |||||||    
T  44422778 tttcataagc 44422787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 601 - 673
Target Start/End: Complemental strand, 3218611 - 3218539
Alignment:
Q  601 gagcaagctttcgagaattattgatcatgtacttttactccattctgggccaatcaaaaagttcaagctctcc 673  Q
    ||||||||| | ||||||| |||||||||||||| |||| |||||||| || ||||| |||||| ||||||||    
T  3218611 gagcaagctgttgagaattgttgatcatgtacttctacttcattctggaccgatcaacaagttccagctctcc 3218539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 225
Target Start/End: Complemental strand, 32515470 - 32515374
Alignment:
Q  129 ataagctgataacaacttatagacatgtcataagctgtttacataagcaatgccaaagattcttataagagcttatgtcagtaaataaactcaaata 225  Q
    ||||| ||| |||||||||| ||||||||||| ||||||| |||||||  | ||||| | ||| | ||| |||||||| |||| |||||||||||||    
T  32515470 ataagttgaaaacaacttattgacatgtcatacgctgtttccataagctctcccaaacagtctcacaagtgcttatgttagtagataaactcaaata 32515374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 770 - 825
Target Start/End: Complemental strand, 9818814 - 9818759
Alignment:
Q  770 caacgctataaaataccttcatgcttattttcttgtcaaggtttacatcatttaga 825  Q
    ||||||||||| |||||||||| |||||| || || ||||||||||||||||||||    
T  9818814 caacgctataagataccttcatccttattctcctgccaaggtttacatcatttaga 9818759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 168
Target Start/End: Original strand, 6292472 - 6292573
Alignment:
Q  67 tcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgt 166  Q
    ||||||| |||||| |||   |||||||||||||| ||||||||  || |||| |||||   ||||||||| |||| |||||  ||||||||||||||||    
T  6292472 tcaaattattttcacataacttataagctattttcgtaaactattttggagagcttatgaaaataagctgaaaacagcttatgaacatgtcataagctgt 6292571  T
Q  167 tt 168  Q
    ||    
T  6292572 tt 6292573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 176
Target Start/End: Original strand, 25479560 - 25479669
Alignment:
Q  67 tcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgt 166  Q
    ||||||||| |||||||| |||||||| | ||||| ||| |||||||  |||| |||||   ||||||||| ||||||| ||  ||||||||||| || |    
T  25479560 tcaaattgtcttcatataggctataagttgttttcataagctatcctagagagcttatgaaaataagctgaaaacaactaatgaacatgtcataatctat 25479659  T
Q  167 ttacataagc 176  Q
    || |||||||    
T  25479660 tttcataagc 25479669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 616 - 664
Target Start/End: Original strand, 2006414 - 2006462
Alignment:
Q  616 aattattgatcatgtacttttactccattctgggccaatcaaaaagttc 664  Q
    |||||||||||| |||||||||||  |||||||||||||||| ||||||    
T  2006414 aattattgatcaggtacttttactttattctgggccaatcaacaagttc 2006462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 161
Target Start/End: Original strand, 4549211 - 4549303
Alignment:
Q  69 aaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataa 161  Q
    ||||| |||| ||||| ||||||||||  ||||  ||||||||| | | || |||||   ||||||||| |||||||||||||||||||||||    
T  4549211 aaattctttttatataagctataagctgctttcacaaactatccaggatagcttatggaaataagctgaaaacaacttatagacatgtcataa 4549303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 168
Target Start/End: Original strand, 27140478 - 27140558
Alignment:
Q  88 tataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgttt 168  Q
    |||||||| ||||  ||| ||||| || |||| |||||   ||||||||| |||||||||| |||||||||||||||||||    
T  27140478 tataagctgtttttataagctatcatggagagcttatgcaaataagctgaaaacaacttatggacatgtcataagctgttt 27140558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 68 - 160
Target Start/End: Complemental strand, 33722491 - 33722399
Alignment:
Q  68 caaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcata 160  Q
    |||||||| ||||||||| ||| ||||| ||||| |||  ||||||  |||| |||||   ||||||||| ||||||||||||| ||||||||    
T  33722491 caaattgtgttcatatatactacaagcttttttcataagttatcctacagaggttatggaaataagctgaaaacaacttatagatatgtcata 33722399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 122
Target Start/End: Complemental strand, 4363723 - 4363668
Alignment:
Q  67 tcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagttt 122  Q
    ||||| |||||||||||| ||||||| |||||||| ||| |||||||| |||||||    
T  4363723 tcaaactgttttcatataagctataacctattttcataagctatcctgaagagttt 4363668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 28689481 - 28689442
Alignment:
Q  129 ataagctgataacaacttatagacatgtcataagctgttt 168  Q
    ||||||||| |||||||||| |||||||||||||||||||    
T  28689481 ataagctgaaaacaacttatggacatgtcataagctgttt 28689442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 772 - 826
Target Start/End: Original strand, 3340636 - 3340690
Alignment:
Q  772 acgctataaaataccttcatgcttattttcttgtcaaggtttacatcatttagaa 826  Q
    |||||||||||||||||  |||||||| ||||||||| |||| || |||||||||    
T  3340636 acgctataaaataccttgctgcttattctcttgtcaaagtttgcaacatttagaa 3340690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 698 - 756
Target Start/End: Original strand, 3349436 - 3349494
Alignment:
Q  698 gatattgatcgatggactcttcatctaaccagaaggcctgttaaagagtttgtgctgga 756  Q
    ||||||||||| |||| ||||||||||||| |||| | | |||||||||||||| ||||    
T  3349436 gatattgatcggtggattcttcatctaaccggaagacatattaaagagtttgtgttgga 3349494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 165
Target Start/End: Complemental strand, 12477378 - 12477280
Alignment:
Q  67 tcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctg 165  Q
    ||||| ||||||||| || | |||| ||| ||||  ||| ||||| || ||||| ||||   ||||||||| |||||||||| ||||||||||||||||    
T  12477378 tcaaactgttttcatgtaagatatatgcttttttaataagctatcatggagagtgtatggaaataagctgaaaacaacttatggacatgtcataagctg 12477280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 227
Target Start/End: Original strand, 15581299 - 15581393
Alignment:
Q  133 gctgataacaacttatagacatgtcataagctgtttacataagcaatgccaaagattcttataagagcttatgtcagtaaataaactcaaataag 227  Q
    ||||| |||| ||||||||||||||||||| ||||| ||| |||  | ||||| | ||| | ||| ||||||||||||| |||| || |||||||    
T  15581299 gctgaaaacagcttatagacatgtcataagttgtttccattagctcttccaaacaatctcacaagtgcttatgtcagtagataagctaaaataag 15581393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 168
Target Start/End: Original strand, 33759557 - 33759650
Alignment:
Q  75 ttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgttt 168  Q
    |||||||||||| |||||||||||||| ||||||||| || |||  |||||   |||| | ||||||| ||| | ||||||| ||| |||||||    
T  33759557 ttttcatatatgttataagctattttcgtaaactatcttggagatcttatggaaataaacagataacagcttgtggacatgttataggctgttt 33759650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 148
Target Start/End: Complemental strand, 34179963 - 34179882
Alignment:
Q  67 tcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttat 148  Q
    |||||||||||| || || ||||||| || ||||| |||||||||||| | ||||||||   ||| ||||| ||||||||||    
T  34179963 tcaaattgttttaatctaagctataaactgttttcataaactatcctgaaaagtttatggaaatacgctgaaaacaacttat 34179882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 38170717 - 38170672
Alignment:
Q  131 aagctgataacaacttatagacatgtcataagctgtttacataagc 176  Q
    ||||||| ||||||||||  |||||||||||||||||| |||||||    
T  38170717 aagctgaaaacaacttatgaacatgtcataagctgttttcataagc 38170672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 4e-25; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 419 - 570
Target Start/End: Original strand, 20934214 - 20934365
Alignment:
Q  419 gatagaattagtagtttaccaggtcatataatagaccaaattctctcaattttaccaattaaggaagcagtgagaacaagtattttatcaaccaaatgga 518  Q
    |||||||| ||| | |||||||||||| |||||||||| |||||  |    || ||||||| ||||||||||||||||||| ||||||| |  |||||||    
T  20934214 gatagaataagttgcttaccaggtcatgtaatagaccagattctgacttacttgccaattagggaagcagtgagaacaagtgttttatctaaaaaatgga 20934313  T
Q  519 ggtacaaatgggccacacttccaaatcttgtgtttgatagccaatgtatctc 570  Q
    || ||||||||  |||||| |||||||||||||||||||| |||||| ||||    
T  20934314 ggaacaaatggtacacactcccaaatcttgtgtttgatagacaatgtctctc 20934365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 419 - 664
Target Start/End: Original strand, 39273803 - 39274051
Alignment:
Q  419 gatagaattagtagtttaccaggtcatataatagaccaaattctctcaattttaccaattaaggaagcagtgagaacaagtattttatcaaccaaatgga 518  Q
    |||||||||||| | ||||| |||||| ||||||| || ||||| ||    || ||||||| ||||||||||||||||||| |||| || | | ||||||    
T  39273803 gatagaattagttgcttaccgggtcatgtaatagatcagattctgtcttgcttgccaattagggaagcagtgagaacaagtgttttgtccagccaatgga 39273902  T
Q  519 ggtacaaatgggccacacttccaaatcttgtgtttgatagccaatgtatctccgaca---cttctgaagaccttttagttatcaagagcaagctttcgag 615  Q
    |||||||||||  |||||| |||||||||||||||||||| |  ||| |||| |  |    |||  |||||| ||||| |||  ||| |||||||| ||     
T  39273903 ggtacaaatggtacacactaccaaatcttgtgtttgatagacgttgtgtctctgctagaggttcccaagaccctttagatattgagaacaagcttttgaa 39274002  T
Q  616 aattattgatcatgtacttttactccattctgggccaatcaaaaagttc 664  Q
    |||| ||||||||||||||||||| || ||||| || ||||| ||||||    
T  39274003 aattgttgatcatgtacttttacttcactctggacctatcaacaagttc 39274051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 412 - 672
Target Start/End: Original strand, 20923224 - 20923487
Alignment:
Q  412 ggagcccgatagaattagtagtttaccaggtcatataatagaccaaattctctcaattttaccaattaaggaagcagtgagaacaagtattttatcaacc 511  Q
    |||| |||||||||||||| | ||||||| |||||||||||||||  |||| |||   ||  |||| |||||||||| |||||||||| ||||||| | |    
T  20923224 ggagtccgatagaattagttgcttaccagatcatataatagaccattttctttcacgcttgtcaatcaaggaagcagggagaacaagtgttttatctaac 20923323  T
Q  512 aaatggaggtacaaatgggccacacttccaaatcttgtgtttgatagccaa--tgtatctccgaca-cttctgaagaccttttagttatcaagagcaagc 608  Q
    ||||||||| | |||||| ||||||  ||  |||||||||| ||||  |||  ||||||| |  ||  ||| ||||| | ||  |||||| ||| ||||     
T  20923324 aaatggaggaaaaaatggtccacacaaccggatcttgtgttcgataaacaatgtgtatctgctgcagtttccgaagatccttctgttatcgagaacaagt 20923423  T
Q  609 tttcgagaattattgatcatgtacttttactccattctgggccaatcaaaaagttcaagctctc 672  Q
    ||  ||| | | |||| |||||||||||||| ||||||||||||||||| ||||||||| ||||    
T  20923424 ttgtgaggactgttgaccatgtacttttacttcattctgggccaatcaacaagttcaagatctc 20923487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 475 - 667
Target Start/End: Original strand, 20952814 - 20953003
Alignment:
Q  475 aattaaggaagcagtgagaacaagtattttatcaaccaaatggaggtacaaatgggccacacttccaaatcttgtgtttgatagccaatgtatctccgac 574  Q
    ||||| ||| ||||||||||||||| ||||||| |  ||||||||| ||||||||  |||||||||||||||||||||||||||  | ||| |  | | |    
T  20952814 aattagggatgcagtgagaacaagtgttttatctagaaaatggaggaacaaatggaacacacttccaaatcttgtgtttgatagaaattgtgttgcagcc 20952913  T
Q  575 acttctgaagaccttttagttatcaagagcaagctttcgagaattattgatcatgtacttttactccattctgggccaatcaaaaagttcaag 667  Q
    |    ||| ||||  ||||||||  |||| ||| | | || |||| ||||||||||||||||||| ||||||||||||||||| | |||||||    
T  20952914 a---ttgatgaccagttagttattgagaggaagttattgaaaattgttgatcatgtacttttacttcattctgggccaatcaacatgttcaag 20953003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 702 - 940
Target Start/End: Original strand, 20923532 - 20923770
Alignment:
Q  702 ttgatcgatggactcttcatctaaccagaaggcctgttaaagagtttgtgctggaaatctggaaagggcaacgctataaaataccttcatgcttattttc 801  Q
    ||||||| |||| |||||||||||| |||||| || ||||| |  ||| |||||| || |||   | |||||||||||| |||||||  |||||||| ||    
T  20923532 ttgatcggtggattcttcatctaacaagaaggtctattaaaaatcttgagctggacatttggttcgagcaacgctataacataccttggtgcttattctc 20923631  T
Q  802 ttgtcaaggtttacatcatttagaattatttaactgttggcttataccaccatcaacatttcaaggattcaggaacttgaagagtcttgatctgcaacat 901  Q
    ||||||| |||||||||||||| | || |||   | || ||||| ||| ||| | |  ||| |||| |||| ||||||||| |||||| |  || ||||     
T  20923632 ttgtcaaagtttacatcatttaaatttgttttgttcttcgcttaaacctccagcgatgtttgaaggcttcatgaacttgaaaagtcttcaattggaacaa 20923731  T
Q  902 gttaccttgtctcaagattcttttgaaaacttgatatct 940  Q
    |||||  || || ||||| ||||||||||||||||||||    
T  20923732 gttacagtggctaaagatgcttttgaaaacttgatatct 20923770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 473 - 672
Target Start/End: Original strand, 20926883 - 20927086
Alignment:
Q  473 ccaattaaggaagcagtgagaacaagtattttatc-aaccaaatggaggtacaaatgggccacacttccaaatcttgtgtttgatagccaatgtatctc- 570  Q
    ||||||| |||||||| |||||||||| ||||||| ||  ||||||||| ||||| ||  |||||| ||||||||||| |||||||| |||||| ||||     
T  20926883 ccaattagggaagcagcgagaacaagtgttttatctaaaaaaatggaggaacaaagggtacacactaccaaatcttgtctttgatagtcaatgtgtctct 20926982  T
Q  571 -cgaca-cttctgaagaccttttagttatcaagagcaagctttcgagaattattgatcatgtacttttactccattctgggccaatcaaaaagttcaagc 668  Q
     |  || ||||  ||||||| |||||||||   || ||| ||| || | ||  ||||||||| |||||||| |||| |||||||||||| | |||||||     
T  20926983 gctgcagcttccaaagacctgttagttatcgctaggaagtttttgaaatttgctgatcatgtccttttacttcattatgggccaatcaacatgttcaagt 20927082  T
Q  669 tctc 672  Q
    ||||    
T  20927083 tctc 20927086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 69 - 174
Target Start/End: Original strand, 680484 - 680589
Alignment:
Q  69 aaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgttt 168  Q
    ||||||||||| |||| |||||||||||||||| ||| ||||| || |||  || ||   ||||||||| ||||  ||||| ||||||||||||||||||    
T  680484 aaattgttttcgtataagctataagctattttcataagctatcttgaagaacttgtgaaaataagctgaaaacagtttataaacatgtcataagctgttt 680583  T
Q  169 acataa 174  Q
     |||||    
T  680584 tcataa 680589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 161
Target Start/End: Complemental strand, 15866754 - 15866665
Alignment:
Q  72 ttgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataa 161  Q
    ||||||||||||| ||||||||| | |||| ||| |||||||| |||| ||||||  | ||||||| |||| |||||| |||||||||||    
T  15866754 ttgttttcatataagctataagccactttcataagctatcctggagagcttatgtaaacaagctgaaaacaccttatatacatgtcataa 15866665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 67 - 168
Target Start/End: Original strand, 43141850 - 43141951
Alignment:
Q  67 tcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgt 166  Q
    ||||||||||| |||||| |||||||| | ||||| ||| |||||||| ||||||||||   ||||  ||| |||||||||| | ||||||||||| |||    
T  43141850 tcaaattgtttccatataagctataagatgttttcataagctatcctgaagagtttatggaaataaaatgaaaacaacttatgggcatgtcataagttgt 43141949  T
Q  167 tt 168  Q
    ||    
T  43141950 tt 43141951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 175
Target Start/End: Original strand, 40158697 - 40158805
Alignment:
Q  67 tcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgt 166  Q
    ||||| ||||||| |||| || ||||| | ||||| |||  ||| ||| |||| ||||||   |||||||| ||||||||||| ||||||||||||||||    
T  40158697 tcaaactgttttcgtataagcaataagttgttttcataagttattctggagagcttatgtaattaagctgaaaacaacttataaacatgtcataagctgt 40158796  T
Q  167 ttacataag 175  Q
    || ||||||    
T  40158797 tttcataag 40158805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 174
Target Start/End: Original strand, 41817170 - 41817254
Alignment:
Q  90 taagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgtttacataa 174  Q
    |||||||||||| |||||||||||| |||| |||||   ||||||||| ||||| ||||  |||||||||||| ||||| |||||    
T  41817170 taagctattttcataaactatcctggagagcttatggaaataagctgaaaacaaattatcaacatgtcataagatgttttcataa 41817254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 176
Target Start/End: Complemental strand, 5759660 - 5759557
Alignment:
Q  73 tgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgata-acaacttatagacatgtcataagctgtttaca 171  Q
    ||||||| ||||||||||||||| ||||| ||| |||| ||| || |||| ||   ||||||||| | ||||||||| |||||||| |||||||||| ||    
T  5759660 tgttttcgtatatgctataagctgttttcataagctattctggagggtttgtgaaaataagctgaaacacaacttatggacatgtc-taagctgtttcca 5759562  T
Q  172 taagc 176  Q
    |||||    
T  5759561 taagc 5759557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 787373 - 787419
Alignment:
Q  129 ataagctgataacaacttatagacatgtcataagctgtttacataag 175  Q
    ||||||||| |||| ||||| ||||||||||||||||||| ||||||    
T  787373 ataagctgaaaacagcttatggacatgtcataagctgttttcataag 787419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 229
Target Start/End: Original strand, 1830150 - 1830180
Alignment:
Q  199 gcttatgtcagtaaataaactcaaataagtc 229  Q
    |||||||||||||||||||||||||||||||    
T  1830150 gcttatgtcagtaaataaactcaaataagtc 1830180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 176
Target Start/End: Original strand, 12215793 - 12215895
Alignment:
Q  74 gttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgtttacata 173  Q
    |||| ||||||||||||||||| ||||  ||| | |||||  |||| ||||| | ||| | ||| |||| ||||| ||||||||||||||| ||| ||||    
T  12215793 gtttccatatatgctataagctgtttttataagccatccttgagagcttatgggaatatggtgaaaacagcttatggacatgtcataagctatttccata 12215892  T
Q  174 agc 176  Q
    |||    
T  12215893 agc 12215895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 22681275 - 22681230
Alignment:
Q  68 caaattgttttcatatatgctataagctattttcctaaactatcct 113  Q
    ||||||||||||||||| |||||||||| ||||| ||| |||||||    
T  22681275 caaattgttttcatataagctataagctgttttcataatctatcct 22681230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 1e-22; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 706 - 889
Target Start/End: Original strand, 21237594 - 21237777
Alignment:
Q  706 tcgatggactcttcatctaaccagaaggcctgttaaagagtttgtgctggaaatctggaaagggcaacgctataaaataccttcatgcttattttcttgt 805  Q
    |||||||| ||||||| |||  |||||| || |||||||  ||||| |||| ||| ||| ||||||| | ||||| |||||||  |||||||| ||||||    
T  21237594 tcgatggattcttcatttaataagaaggtctattaaagaacttgtgttggatatcaggacagggcaaagttataagataccttggtgcttattctcttgt 21237693  T
Q  806 caaggtttacatcatttagaattatttaactgttggcttataccaccatcaacatttcaaggattcaggaacttgaagagtctt 889  Q
    ||| ||||||||||||||||||||   |  |||||||||| ||| ||| |||| ||| |||| |||||||||||| | ||||||    
T  21237694 caaagtttacatcatttagaattaacaagttgttggcttaaacctccaacaacgtttgaaggcttcaggaacttggaaagtctt 21237777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 434 - 654
Target Start/End: Original strand, 21237304 - 21237527
Alignment:
Q  434 ttaccaggtcatataatagaccaaattctctcaattttaccaattaaggaagcagtgagaacaagtattttatcaaccaaatggaggtacaaatgggcca 533  Q
    ||||||||| || ||| |||||| ||||||| |   || ||||||||||||||| ||||||||||| | ||||| | |||||||||  ||||||||  ||    
T  21237304 ttaccaggtaatgtaacagaccagattctcttacacttgccaattaaggaagcattgagaacaagtgtattatccagcaaatggagaaacaaatggtaca 21237403  T
Q  534 cacttccaaatcttgtgtttgatagccaatgtatctccga---cacttctgaagaccttttagttatcaagagcaagctttcgagaattattgatcatgt 630  Q
    |  | |||||||||||||| ||||  || ||| |||| ||    |||| | |||||| || || |||||  | |||| ||| ||||||| ||||||||||    
T  21237404 ctatgccaaatcttgtgttcgataaacattgtgtctctgatgcaacttttcaagacccttcaggtatcagtaacaagtttttgagaattgttgatcatgt 21237503  T
Q  631 acttttactccattctgggccaat 654  Q
    |||| |||| ||||||||| ||||    
T  21237504 acttctacttcattctgggtcaat 21237527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 161
Target Start/End: Complemental strand, 54325128 - 54325034
Alignment:
Q  67 tcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataa 161  Q
    ||||| |||||||||||| ||||||||||||||||  || ||||| || ||||||||||   |||| |||| |||| ||||| ||||| ||||||    
T  54325128 tcaaactgttttcatataagctataagctattttcaaaagctatcatggagagtttatggagataaactgaaaacagcttatggacatatcataa 54325034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 176
Target Start/End: Complemental strand, 3176133 - 3176086
Alignment:
Q  129 ataagctgataacaacttatagacatgtcataagctgtttacataagc 176  Q
    ||||||||| ||||||||||||||||| |||||| ||||| |||||||    
T  3176133 ataagctgaaaacaacttatagacatgacataagatgttttcataagc 3176086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 50800059 - 50800016
Alignment:
Q  129 ataagctgataacaacttatagacatgtcataagctgtttacat 172  Q
    ||||||||| |||| ||||||||||||||||||| |||||||||    
T  50800059 ataagctgaaaacagcttatagacatgtcataagttgtttacat 50800016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 65 - 167
Target Start/End: Complemental strand, 30207664 - 30207562
Alignment:
Q  65 aatcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagct 164  Q
    ||||||| |||||||||||| |||||||| | ||||| ||| ||| | |  |||| |||||   ||||||||| |||| |||| |||||||||||| |||    
T  30207664 aatcaaactgttttcatataagctataagttgttttcataagctaccttagagagattatggaaataagctgaaaacagcttacagacatgtcatatgct 30207565  T
Q  165 gtt 167  Q
    |||    
T  30207564 gtt 30207562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 147
Target Start/End: Original strand, 51630092 - 51630170
Alignment:
Q  69 aaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaactta 147  Q
    |||||||||| ||||| |||||||||||||||| ||| ||||| || ||| ||||||   ||||||||| |||| ||||    
T  51630092 aaattgttttgatataagctataagctattttcataagctatcttgaagaatttatgaaaataagctgaaaacatctta 51630170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 162
Target Start/End: Complemental strand, 6979039 - 6978958
Alignment:
Q  81 tatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataag 162  Q
    ||||||||||||| | ||||  ||| | |||||  ||||||||||   ||||||||| |||| |||||||||||||||||||    
T  6979039 tatatgctataagttgtttttataagccatcctaaagagtttatgaaaataagctgaaaacagcttatagacatgtcataag 6978958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 168
Target Start/End: Complemental strand, 8422926 - 8422830
Alignment:
Q  71 attgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgttt 168  Q
    |||||||||||||| |||||||| | |||||  || ||||| || ||||||||||   |||||||||||| |  |||||||||||| |||| ||||||    
T  8422926 attgttttcatataagctataagttgttttcacaatctatcttggagagtttatgcaaataagctgataa-attttatagacatgttataaactgttt 8422830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 168
Target Start/End: Original strand, 19304969 - 19305006
Alignment:
Q  131 aagctgataacaacttatagacatgtcataagctgttt 168  Q
    ||||||| |||||||||| |||||||||||||||||||    
T  19304969 aagctgaaaacaacttatggacatgtcataagctgttt 19305006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 168
Target Start/End: Original strand, 23819068 - 23819169
Alignment:
Q  67 tcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgt 166  Q
    ||||| |||||||||||| | |||||  | ||||| ||| ||||| || |||| ||||    ||||| ||| |||||||||| |||||||||||||||||    
T  23819068 tcaaactgttttcatataagttataacatgttttcataagctatcttgaagagcttatagaaataagatgaaaacaacttatggacatgtcataagctgt 23819167  T
Q  167 tt 168  Q
    ||    
T  23819168 tt 23819169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 168
Target Start/End: Original strand, 29263353 - 29263450
Alignment:
Q  71 attgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgttt 168  Q
    |||||||||| ||| || ||||| | ||||| ||| |||||||| |||| || ||   ||||||||| ||||||||||  |||| |||||||||||||    
T  29263353 attgttttcaaataagcgataagttgttttcataagctatcctgcagagcttgtggaaataagctgaaaacaacttatgaacatatcataagctgttt 29263450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 2e-21; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 474 - 663
Target Start/End: Original strand, 17969670 - 17969862
Alignment:
Q  474 caattaaggaagcagtgagaacaagtattttatcaaccaaatggaggtacaaatgggccacacttccaaatcttgtgtttgatagccaatgt--atctcc 571  Q
    |||| |||||||||| |||||||||| ||||||| | |||||||| | | |||||| | || |  ||| |||||||||||||||| ||||||  |||| |    
T  17969670 caatcaaggaagcagggagaacaagtgttttatcgagcaaatggaagaagaaatggtctacccaaccagatcttgtgtttgatagacaatgtgtatctac 17969769  T
Q  572 gaca-cttctgaagaccttttagttatcaagagcaagctttcgagaattattgatcatgtacttttactccattctgggccaatcaaaaagtt 663  Q
       | |||| |||||| ||| ||||||| || ||||| ||| |||||| |||||||||||||||||||| ||||| ||||||||||| |||||    
T  17969770 tgtagcttccgaagacttttcagttatcgagggcaagtttttgagaatcattgatcatgtacttttacttcattcagggccaatcaacaagtt 17969862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 702 - 829
Target Start/End: Original strand, 17969916 - 17970043
Alignment:
Q  702 ttgatcgatggactcttcatctaaccagaaggcctgttaaagagtttgtgctggaaatctggaaagggcaacgctataaaataccttcatgcttattttc 801  Q
    ||||||| |||| ||||||||||||  ||||  ||||||||||| ||||| |||| || |||  |||| ||| |||||| |||||||  |||||||||||    
T  17969916 ttgatcggtggattcttcatctaactggaagatctgttaaagagcttgtgttggacatttgggcaggggaactctataagataccttggtgcttattttc 17970015  T
Q  802 ttgtcaaggtttacatcatttagaatta 829  Q
    || |||| |||||||||||||| |||||    
T  17970016 ttatcaaagtttacatcatttaaaatta 17970043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 67 - 177
Target Start/End: Complemental strand, 10272522 - 10272412
Alignment:
Q  67 tcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgt 166  Q
    ||||||||||||| |||| |||||||| | ||||| ||| | ||| || ||||||||||   ||||||||| ||||||||| |||||||||||||| |||    
T  10272522 tcaaattgttttcgtataagctataagttgttttcataagccatcttggagagtttatgaaaataagctgaaaacaacttacagacatgtcataagttgt 10272423  T
Q  167 ttacataagca 177  Q
    ||  |||||||    
T  10272422 ttctataagca 10272412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 164
Target Start/End: Complemental strand, 32408682 - 32408586
Alignment:
Q  68 caaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagct 164  Q
    |||||| |||||||||| ||||||| |||||||| ||| |||||||| |||| |||||   |||||| || | |||||||  |||||||||||||||    
T  32408682 caaattattttcatataagctataaactattttcataagctatcctgaagagcttatggaaataagcagaaaccaacttacggacatgtcataagct 32408586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 69 - 148
Target Start/End: Complemental strand, 16945072 - 16944993
Alignment:
Q  69 aaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttat 148  Q
    |||||||||||||| | |||||||||||||||| | |||||||||| |||| ||| ||  ||||||||| |||| |||||    
T  16945072 aaattgttttcatagaagctataagctattttcattaactatcctgaagagcttaagtaaataagctgaaaacagcttat 16944993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 69 - 168
Target Start/End: Complemental strand, 41957540 - 41957441
Alignment:
Q  69 aaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgttt 168  Q
    ||||||||||||| || | |||||||| ||||| ||| |||||||  |||  |||||   ||||| ||| |||||||||| |||||||||||||||||||    
T  41957540 aaattgttttcatgtaagttataagctgttttcataagctatccttgagaacttatgaaaataagatgaaaacaacttatggacatgtcataagctgttt 41957441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 18700427 - 18700472
Alignment:
Q  131 aagctgataacaacttatagacatgtcataagctgtttacataagc 176  Q
    ||||||| |||||||||||||||||||||||| ||||| |||||||    
T  18700427 aagctgaaaacaacttatagacatgtcataagttgtttccataagc 18700472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 65 - 153
Target Start/End: Original strand, 12975324 - 12975411
Alignment:
Q  65 aatcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagaca 153  Q
    |||||||||||||||||||| |||||||||| | ||| ||| ||||| || |||| ||||| | ||||| ||| |||||||||| ||||    
T  12975324 aatcaaattgttttcatataagctataagctgtgttcataagctatcttggagagcttatg-gaataagttgaaaacaacttatggaca 12975411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 173
Target Start/End: Complemental strand, 17258952 - 17258868
Alignment:
Q  89 ataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgtttacata 173  Q
    ||||||| ||||| |||||||||||| |||| |||||   ||||||||| |||| |||||  |||||||||||||| ||| ||||    
T  17258952 ataagctgttttcataaactatcctgaagagcttatgaaaataagctgaaaacagcttatgaacatgtcataagctattttcata 17258868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 176
Target Start/End: Complemental strand, 13604934 - 13604831
Alignment:
Q  73 tgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgtttacat 172  Q
    ||||||||||||  || |||||| ||||| |||  |||| || |||| |||||   ||||| ||| |||||| ||| ||||||||||||||||||| |||    
T  13604934 tgttttcatataaactttaagctgttttcataagttatcttgaagagcttatgaaaataagttgaaaacaacgtatggacatgtcataagctgttttcat 13604835  T
Q  173 aagc 176  Q
    ||||    
T  13604834 aagc 13604831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 174
Target Start/End: Original strand, 16889714 - 16889821
Alignment:
Q  67 tcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgt 166  Q
    ||||| |||||| ||| | |||||||||| ||||| ||| |||| ||  ||||||||||   |||| |||| ||||||||||||||||   |||||||||    
T  16889714 tcaaactgtttttatagaagctataagctgttttcataagctatgctagagagtttatggaaataatctgaaaacaacttatagacatagtataagctgt 16889813  T
Q  167 ttacataa 174  Q
    || |||||    
T  16889814 tttcataa 16889821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 17369468 - 17369429
Alignment:
Q  129 ataagctgataacaacttatagacatgtcataagctgttt 168  Q
    |||| |||| ||||||||||||||||||||||||||||||    
T  17369468 ataatctgaaaacaacttatagacatgtcataagctgttt 17369429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 199 - 229
Target Start/End: Complemental strand, 1084098 - 1084068
Alignment:
Q  199 gcttatgtcagtaaataaactcaaataagtc 229  Q
    |||||||||||||||||||||||||||||||    
T  1084098 gcttatgtcagtaaataaactcaaataagtc 1084068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 175
Target Start/End: Complemental strand, 10280627 - 10280582
Alignment:
Q  129 ataagctgataacaacttatagacatgtcataagctgtttacataag 175  Q
    |||||||||||||||||||| ||||| ||||||||||||| ||||||    
T  10280627 ataagctgataacaacttatggacat-tcataagctgtttccataag 10280582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 161
Target Start/End: Original strand, 11707055 - 11707128
Alignment:
Q  88 tataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataa 161  Q
    |||||||| ||||| ||| ||||| ||||||| || ||   ||||||||| ||||||||||| |||||||||||    
T  11707055 tataagctgttttcataagctatcttgtagagcttttgaaaataagctgaaaacaacttataaacatgtcataa 11707128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 67 - 162
Target Start/End: Complemental strand, 281939 - 281844
Alignment:
Q  67 tcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataag 162  Q
    |||| ||||||||||||| |||||||||| | ||| ||| |||||||  |||| | |||   ||||||||| ||||||||||||||||||||||||    
T  281939 tcaacttgttttcatataagctataagctgtgttcataagctatcctagagagctcatggaaataagctgaaaacaacttatagacatgtcataag 281844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 69 - 153
Target Start/End: Complemental strand, 31671163 - 31671079
Alignment:
Q  69 aaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagaca 153  Q
    |||||||||||||||| |||||||||| ||||| |||||||||||  | || |||||   ||||||||| ||||||| |||||||    
T  31671163 aaattgttttcatataagctataagctgttttcgtaaactatcctagatagcttatgaaaataagctgaaaacaactgatagaca 31671079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 7785773 - 7785734
Alignment:
Q  129 ataagctgataacaacttatagacatgtcataagctgttt 168  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  7785773 ataagctgaaaacaacttatagacatgtcataagctgttt 7785734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 71 - 230
Target Start/End: Complemental strand, 28088309 - 28088151
Alignment:
Q  71 attgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgtttac 170  Q
    |||||||||||||| ||||||| || ||||| ||| ||||| || |||| | |||   ||||||| | |||||| ||||||||||| ||||| ||||| |    
T  28088309 attgttttcatataagctataaactgttttcataagctatcatggagagctcatggaaataagctcaaaacaacctatagacatgt-ataagttgtttcc 28088211  T
Q  171 ataagcaatgccaaagattcttataagagcttatgtcagtaaataaactcaaataagtct 230  Q
    |||||| || |||||   ||| | ||| | |||| ||| ||||||| |||||||||||||    
T  28088210 ataagccattccaaactgtctcaaaagtggttatatcaataaataagctcaaataagtct 28088151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 125
Target Start/End: Original strand, 18264308 - 18264366
Alignment:
Q  67 tcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatg 125  Q
    |||||||||||||||| | | |||||||||||||| |||||||||||| |||| |||||    
T  18264308 tcaaattgttttcatacaagttataagctattttcttaaactatcctgaagaggttatg 18264366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 176
Target Start/End: Original strand, 3155155 - 3155263
Alignment:
Q  67 tcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgt 166  Q
    ||||| ||||| ||||||  ||||||||||||||| |||  ||||||| |||| | |||   ||||||||| |||| ||||||||||||||||||| |||    
T  3155155 tcaaactgtttccatataacctataagctattttcataagatatcctggagagct-atggaaataagctgaaaacagcttatagacatgtcataagttgt 3155253  T
Q  167 ttacataagc 176  Q
     || ||||||    
T  3155254 gtatataagc 3155263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 107 - 168
Target Start/End: Original strand, 34939763 - 34939824
Alignment:
Q  107 ctatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgttt 168  Q
    |||||||| ||||||||||   ||||||||| ||||| |||| |||||||||||||||||||    
T  34939763 ctatcctggagagtttatggaaataagctgaaaacaatttatggacatgtcataagctgttt 34939824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 174
Target Start/End: Complemental strand, 2027489 - 2027390
Alignment:
Q  75 ttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgtttacataa 174  Q
    ||||||||||  ||||||||| || || ||| ||| | |||||||||||  |  ||||||||| |||| ||||| || |||||||||||||||| |||||    
T  2027489 ttttcatataacctataagctgttctcataagctagcatgtagagtttaaataaataagctgaaaacagcttatggaaatgtcataagctgttttcataa 2027390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 176
Target Start/End: Complemental strand, 20377949 - 20377902
Alignment:
Q  129 ataagctgataacaacttatagacatgtcataagctgtttacataagc 176  Q
    |||||| || |||||||||||||||||||||||| ||||| |||||||    
T  20377949 ataagccgaaaacaacttatagacatgtcataagttgttttcataagc 20377902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 229
Target Start/End: Original strand, 30863288 - 30863387
Alignment:
Q  130 taagctgataacaacttatagacatgtcataagctgtttacataagcaatgccaaagattcttataagagcttatgtcagtaaataaactcaaataagtc 229  Q
    |||||||| ||||||||||  |||||||||||| ||||| |||||||  | ||||||| ||| | ||| | ||||| || ||||||  ||||||||||||    
T  30863288 taagctgaaaacaacttatgtacatgtcataagttgttttcataagctctaccaaagagtctaacaagtgtttatgccaataaataggctcaaataagtc 30863387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 120
Target Start/End: Complemental strand, 22691611 - 22691558
Alignment:
Q  67 tcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagt 120  Q
    |||||||||||||||||| | ||||| |||||||| ||| |||||||| |||||    
T  22691611 tcaaattgttttcatataagttataacctattttcataacctatcctggagagt 22691558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 100
Target Start/End: Original strand, 22742345 - 22742378
Alignment:
Q  67 tcaaattgttttcatatatgctataagctatttt 100  Q
    |||||||||||||||||| |||||||||||||||    
T  22742345 tcaaattgttttcatataagctataagctatttt 22742378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 175
Target Start/End: Complemental strand, 20502153 - 20502051
Alignment:
Q  73 tgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgtttacat 172  Q
    |||||||||||| |||||||||| ||||| ||| |||||||| |||| ||||| | ||||||||| ||||| | |  ||||||||||| ||||| | |||    
T  20502153 tgttttcatatacgctataagctgttttcataagctatcctgaagagcttatgagaataagctgaaaacaaatgacggacatgtcatatgctgtctgcat 20502054  T
Q  173 aag 175  Q
    |||    
T  20502053 aag 20502051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 63 - 124
Target Start/End: Complemental strand, 33306818 - 33306757
Alignment:
Q  63 ataatcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttat 124  Q
    |||||||||||||||||||||| |||||||||||||||| ||||| || || ||||| ||||    
T  33306818 ataatcaaattgttttcatataagctataagctattttcataaacaattctatagagattat 33306757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 30923927 - 30923883
Alignment:
Q  129 ataagctgataacaacttatagacatgtcataagctgtttacata 173  Q
    ||||||||| |||| ||||||||||||||||||||||||| ||||    
T  30923927 ataagctgaaaacagcttatagacatgtcataagctgtttccata 30923883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 36200115 - 36200179
Alignment:
Q  107 ctatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgtttaca 171  Q
    ||||||||||||| | |||   ||||||||| |||||||||| ||||||||||||| ||||||||    
T  36200115 ctatcctgtagagctcatggaaataagctgaaaacaacttatggacatgtcataagttgtttaca 36200179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 176
Target Start/End: Complemental strand, 42817251 - 42817204
Alignment:
Q  129 ataagctgataacaacttatagacatgtcataagctgtttacataagc 176  Q
    ||||||||| |||||||||| ||||||||||| ||||||| |||||||    
T  42817251 ataagctgaaaacaacttatggacatgtcatatgctgtttccataagc 42817204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 164
Target Start/End: Complemental strand, 52440755 - 52440656
Alignment:
Q  65 aatcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagct 164  Q
    |||||||||||||||| ||| |||||||||||||||| |||  |||| || |||  |||||   || || ||| ||||||||||  ||||||||||||||    
T  52440755 aatcaaattgttttcaaataagctataagctattttcataatttatcttgaagaacttatgaaaattagttgaaaacaacttatgaacatgtcataagct 52440656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 175
Target Start/End: Original strand, 41724253 - 41724299
Alignment:
Q  129 ataagctgataacaacttatagacatgtcataagctgtttacataag 175  Q
    ||||||||| |||||||||| ||||||||||||| ||||| ||||||    
T  41724253 ataagctgaaaacaacttatggacatgtcataagttgtttccataag 41724299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 174
Target Start/End: Complemental strand, 9279387 - 9279310
Alignment:
Q  97 ttttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgtttacataa 174  Q
    ||||| ||||||||| || |||||||| |   ||||||||| |||| |||||| |||||| ||||||||||| |||||    
T  9279387 ttttcataaactatcatgaagagtttaaggaaataagctgaaaacagcttatatacatgttataagctgtttccataa 9279310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 158
Target Start/End: Complemental strand, 16990246 - 16990161
Alignment:
Q  73 tgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtca 158  Q
    |||||||||||| | |||||| | ||||| ||||||||| || |||  || ||   ||||||||| ||||||||||||||||||||    
T  16990246 tgttttcatataagatataagttgttttcttaaactatcatgaagaacttgtgcaaataagctgaaaacaacttatagacatgtca 16990161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 176
Target Start/End: Complemental strand, 27290952 - 27290883
Alignment:
Q  107 ctatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgtttacataagc 176  Q
    |||||||| |||||| |||   ||||||||| |||| ||||| | ||||||||||||||||| |||||||    
T  27290952 ctatcctgcagagttcatggaaataagctgaaaacagcttatgggcatgtcataagctgttttcataagc 27290883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 170
Target Start/End: Original strand, 42039203 - 42039244
Alignment:
Q  129 ataagctgataacaacttatagacatgtcataagctgtttac 170  Q
    ||||||||| ||||||||| || |||||||||||||||||||    
T  42039203 ataagctgaaaacaacttacagccatgtcataagctgtttac 42039244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 229
Target Start/End: Original strand, 6950363 - 6950463
Alignment:
Q  129 ataagctgataacaacttatagacatgtcataagctgtttacataagcaatgccaaagattcttataagagcttatgtcagtaaataaactcaaataagt 228  Q
    ||||||||| |||||||||| ||||||||||| | |||||||||||||  | ||||| | ||| | ||  | ||||| ||||| ||||||||||||||||    
T  6950363 ataagctgaaaacaacttatcgacatgtcataggttgtttacataagctctcccaaacaatctcacaaatgtttatgccagtagataaactcaaataagt 6950462  T
Q  229 c 229  Q
    |    
T  6950463 c 6950463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 168
Target Start/End: Complemental strand, 11188225 - 11188145
Alignment:
Q  88 tataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgttt 168  Q
    ||||| |||||||  ||| |||||||  ||||||||||   |||| |||| ||||| ||||||||||||||||||||||||    
T  11188225 tataaactattttgataagctatcctagagagtttatggtaataaactgaaaacaagttatagacatgtcataagctgttt 11188145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 88 - 176
Target Start/End: Complemental strand, 11569527 - 11569439
Alignment:
Q  88 tataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgtttacataagc 176  Q
    |||||||| ||||| ||| ||||| || |||| || ||   ||||||||| ||||||||||  |||||||||||||||||| |||||||    
T  11569527 tataagctgttttcataagctatcatggagagattttgaaaataagctgaaaacaacttatgtacatgtcataagctgtttccataagc 11569439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 227
Target Start/End: Complemental strand, 30191212 - 30191072
Alignment:
Q  87 ctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgtttacataagcaatgccaaag 186  Q
    ||||||||||||||  ||| |||||||| |  |||||||   ||||||||| ||||| || |  |||||||||||| ||||| |||||||  | |||||     
T  30191212 ctataagctattttgataagctatcctgaaatgtttatggaaataagctgaaaacaagttttgaacatgtcataagttgtttccataagctctcccaaac 30191113  T
Q  187 attcttataagagcttatgtcagtaaataaactcaaataag 227  Q
    | ||| | ||| ||||||| || || |||||||||||||||    
T  30191112 agtctaacaagtgcttatgccaatagataaactcaaataag 30191072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 176
Target Start/End: Original strand, 30259155 - 30259202
Alignment:
Q  129 ataagctgataacaacttatagacatgtcataagctgtttacataagc 176  Q
    |||| |||| |||||||||||||||| ||||||||||||| |||||||    
T  30259155 ataaactgaaaacaacttatagacatatcataagctgtttccataagc 30259202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 175
Target Start/End: Original strand, 4558779 - 4558885
Alignment:
Q  69 aaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgttt 168  Q
    ||||| ||||||||||||||||||||| ||| | ||| |||||||  |||| |||||   |||| || | |||||||||||||||  ||||||| | |||    
T  4558779 aaattattttcatatatgctataagctgtttccataagctatcctagagagcttatggaaataaactaaaaacaacttatagacacatcataagttattt 4558878  T
Q  169 acataag 175  Q
     ||||||    
T  4558879 ccataag 4558885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 100
Target Start/End: Complemental strand, 5349680 - 5349651
Alignment:
Q  71 attgttttcatatatgctataagctatttt 100  Q
    ||||||||||||||||||||||||||||||    
T  5349680 attgttttcatatatgctataagctatttt 5349651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 168
Target Start/End: Complemental strand, 42215377 - 42215296
Alignment:
Q  87 ctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgttt 168  Q
    |||||| |||||||| ||  |||||||| |||| ||||||  ||||||||| |||| |||||  ||| ||||||||||||||    
T  42215377 ctataacctattttcatatgctatcctggagagcttatgtaaataagctgaaaacagcttatgaacaagtcataagctgttt 42215296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 176
Target Start/End: Original strand, 27555 - 27664
Alignment:
Q  67 tcaaattgttttcatatatgctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagctgt 166  Q
    ||||||||||||||||||  ||||||| | ||||| ||||||||| ||   ||  | ||   ||||||||| |||||||||||| ||||||||||||| |    
T  27555 tcaaattgttttcatataaactataagttgttttcataaactatcttggtaagcgtgtggaaataagctgaaaacaacttatagccatgtcataagctat 27654  T
Q  167 ttacataagc 176  Q
    || |||||||    
T  27655 ttccataagc 27664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 176
Target Start/End: Complemental strand, 10646 - 10599
Alignment:
Q  129 ataagctgataacaacttatagacatgtcataagctgtttacataagc 176  Q
    ||||||||| |||||||||| |||||||||| || |||||||||||||    
T  10646 ataagctgaaaacaacttatggacatgtcattagttgtttacataagc 10599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 176
Target Start/End: Original strand, 33894668 - 33894715
Alignment:
Q  129 ataagctgataacaacttatagacatgtcataagctgtttacataagc 176  Q
    ||||||||| |||||||||| ||||||||||| ||||||| |||||||    
T  33894668 ataagctgaaaacaacttatggacatgtcatatgctgttttcataagc 33894715  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 86 - 164
Target Start/End: Complemental strand, 6552364 - 6552286
Alignment:
Q  86 gctataagctattttcctaaactatcctgtagagtttatgtgcataagctgataacaacttatagacatgtcataagct 164  Q
    ||||||| |||||||| ||||||||| || ||||||||||   ||||||||| |||| |||||  | ||||||||||||    
T  6552364 gctataaactattttcataaactatcatgcagagtttatgaaaataagctgaaaacagcttatgaatatgtcataagct 6552286  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 112
Target Start/End: Complemental strand, 5369782 - 5369737
Alignment:
Q  67 tcaaattgttttcatatatgctataagctattttcctaaactatcc 112  Q
    ||||| ||||||||||||||||||||||| ||||| ||| ||||||    
T  5369782 tcaaactgttttcatatatgctataagctgttttcataagctatcc 5369737  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 226
Target Start/End: Original strand, 12242285 - 12242382
Alignment:
Q  129 ataagctgataacaacttatagacatgtcataagctgtttacataagcaatgccaaagattcttataagagcttatgtcagtaaataaactcaaataa 226  Q
    ||||||||| |||||||||||| ||| |||||||| |||| |||||||  |  |||| | ||| | ||||| ||||||||||| || | |||||||||    
T  12242285 ataagctgaaaacaacttataggcatatcataagccgtttgcataagctctctcaaacagtctcacaagaggttatgtcagtagatcacctcaaataa 12242382  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 176
Target Start/End: Complemental strand, 33645980 - 33645943
Alignment:
Q  139 aacaacttatagacatgtcataagctgtttacataagc 176  Q
    |||||||||||||||||||||||| ||||| |||||||    
T  33645980 aacaacttatagacatgtcataagttgtttccataagc 33645943  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 38010694 - 38010739
Alignment:
Q  68 caaattgttttcatatatgctataagctattttcctaaactatcct 113  Q
    ||||||||||||||||| |||||||||| ||||| ||| |||||||    
T  38010694 caaattgttttcatataagctataagctgttttcataatctatcct 38010739  T

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Target: scaffold0147 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 175
Target Start/End: Complemental strand, 12732 - 12687
Alignment:
Q  130 taagctgataacaacttatagacatgtcataagctgtttacataag 175  Q
    |||||||| |||||||||| ||||||||||||| ||||| ||||||    
T  12732 taagctgaaaacaacttatggacatgtcataagttgtttccataag 12687  T

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