View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13239_low_10 (Length: 306)

Name: NF13239_low_10
Description: NF13239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13239_low_10
NF13239_low_10
[»] chr2 (3 HSPs)
chr2 (18-296)||(8020710-8020988)
chr2 (246-301)||(22400494-22400550)
chr2 (246-301)||(22791940-22791996)
[»] chr3 (23 HSPs)
chr3 (100-285)||(28151610-28151795)
chr3 (161-285)||(17744491-17744615)
chr3 (161-285)||(19045811-19045935)
chr3 (114-285)||(28037413-28037584)
chr3 (115-285)||(11420963-11421133)
chr3 (143-285)||(28149970-28150112)
chr3 (19-107)||(28151276-28151364)
chr3 (160-285)||(27954347-27954471)
chr3 (142-238)||(27458885-27458981)
chr3 (189-285)||(28161925-28162021)
chr3 (160-279)||(8539262-8539381)
chr3 (189-285)||(28185968-28186064)
chr3 (160-285)||(27920262-27920389)
chr3 (143-252)||(27776525-27776634)
chr3 (208-285)||(28479860-28479937)
chr3 (208-285)||(28509043-28509120)
chr3 (143-208)||(28056547-28056612)
chr3 (143-208)||(28066972-28067037)
chr3 (22-73)||(28054960-28055011)
chr3 (22-73)||(28065385-28065436)
chr3 (21-73)||(8539704-8539756)
chr3 (25-73)||(28149203-28149251)
chr3 (79-107)||(28161470-28161498)
[»] scaffold0257 (2 HSPs)
scaffold0257 (142-282)||(19079-19219)
scaffold0257 (27-73)||(18626-18672)
[»] scaffold0922 (1 HSPs)
scaffold0922 (219-285)||(1819-1885)
[»] chr4 (2 HSPs)
chr4 (79-107)||(9328792-9328820)
chr4 (79-107)||(9382569-9382597)


Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 296
Target Start/End: Original strand, 8020710 - 8020988
Alignment:
Q  18 atttcttgtattcttttttacactttgtcaataccggaattgaattataccacaatattgacaggttagcgaaataagtgttgaagaaggtgacaaccaa 117  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020710 atttcttgtattcttttttacactttgtcagtaccggaattgaattataccacaatattgacaggttagcgaaataagtgttgaagaaggtgacaaccaa 8020809  T
Q  118 agagcaatagcttctacttcaatcgccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatc 217  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8020810 agagctatagcttctacttcaatcgccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatc 8020909  T
Q  218 gaggtgaagaatctttggatcggttttcttttcttaagttacctcatcgcccttttcattttgaagttaaccttcttct 296  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  8020910 gaggtgaagaatctttggatcggttttcttttcttaagttatctcatcgcccttttcattttgaagttaaccttcttct 8020988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 301
Target Start/End: Original strand, 22400494 - 22400550
Alignment:
Q  246 ttttcttaagttacctcatcgcccttttcattttgaagttaacct-tcttctctctc 301  Q
    |||||||| ||||||||||  ||||||| ||||||||||||| || |||||||||||    
T  22400494 ttttcttatgttacctcataacccttttgattttgaagttaaactctcttctctctc 22400550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 246 - 301
Target Start/End: Original strand, 22791940 - 22791996
Alignment:
Q  246 ttttcttaagttacctcatcgcccttttcattttgaagttaacct-tcttctctctc 301  Q
    |||||||| ||||||||||  ||||||| ||||||||||||| || |||||||||||    
T  22791940 ttttcttatgttacctcataacccttttgattttgaagttaaactctcttctctctc 22791996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 146; Significance: 6e-77; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 100 - 285
Target Start/End: Original strand, 28151610 - 28151795
Alignment:
Q  100 gaagaaggtgacaaccaaagagcaatagcttctacttcaatcgccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaacta 199  Q
    ||||||||||||||||||||||||||||||| |||| |||| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28151610 gaagaaggtgacaaccaaagagcaatagcttatactccaattgacataacaaagcctgtaaccactcaagatgttgatgttgaaatctggcaggaaacta 28151709  T
Q  200 gtaacactaatgacgatcgaggtgaagaatctttggatcggttttcttttcttaagttacctcatcgcccttttcattttgaagtt 285  Q
    ||||||||||||| |||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||||    
T  28151710 gtaacactaatgatgatcaaggtgaagaatctttggatcgcttttattttcttaagttacctcatcgccctttttattttgaagtt 28151795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 161 - 285
Target Start/End: Complemental strand, 17744615 - 17744491
Alignment:
Q  161 ccactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggttttcttttcttaagttacc 260  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||| || | |||| || ||||||||||||| |||| |||||||||||||||    
T  17744615 ccactcaagatgttgatgttgaaatctggcaggaaactagaaagactaatgatgaccaaggtaaaaaatctttggatcgattttattttcttaagttacc 17744516  T
Q  261 tcatcgcccttttcattttgaagtt 285  Q
    ||||||| |||||||||||||||||    
T  17744515 tcatcgctcttttcattttgaagtt 17744491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 161 - 285
Target Start/End: Complemental strand, 19045935 - 19045811
Alignment:
Q  161 ccactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggttttcttttcttaagttacc 260  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||| || | |||| || ||||||||||||| |||| |||||||||||||||    
T  19045935 ccactcaagatgttgatgttgaaatctggcaggaaactagaaagactaatgatgaccaaggtaaaaaatctttggatcgattttattttcttaagttacc 19045836  T
Q  261 tcatcgcccttttcattttgaagtt 285  Q
    ||||||| |||||||||||||||||    
T  19045835 tcatcgctcttttcattttgaagtt 19045811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 114 - 285
Target Start/End: Original strand, 28037413 - 28037584
Alignment:
Q  114 ccaaagagcaatagcttctacttcaatcgccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgac 213  Q
    ||||||||| ||||||||| |||||||  |||||||||||||| | |||||| ||||||||||| |  ||| |||||  ||||||||||||||||||||     
T  28037413 ccaaagagccatagcttctccttcaattaccataacaaagcctgttaccactgaagatgttgatctcaaaaactggcgcgaaactagtaacactaatgat 28037512  T
Q  214 gatcgaggtgaagaatctttggatcggttttcttttcttaagttacctcatcgcccttttcattttgaagtt 285  Q
    | || |||| |||| |||||||||| || || |||||| ||||||||||||| |||||||||||||||||||    
T  28037513 ggtcaaggtaaagactctttggatcagtgttattttctaaagttacctcatcacccttttcattttgaagtt 28037584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 115 - 285
Target Start/End: Original strand, 11420963 - 11421133
Alignment:
Q  115 caaagagcaatagcttctacttcaatcgccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacg 214  Q
    |||| ||| ||||||||| ||  ||| |||||||||||||||   |||| |||||||||||||||| ||||||| ||||||||||||||  ||||||| |    
T  11420963 caaatagccatagcttctcctcaaattgccataacaaagcctgctaccattcaagatgttgatgttaaaatctgtcaggaaactagtaaggctaatgatg 11421062  T
Q  215 atcgaggtgaagaatctttggatcggttttcttttcttaagttacctcatcgcccttttcattttgaagtt 285  Q
    ||| |||||| || |||||||||| ||||| ||||||||||||||  |||| |||||||||||| ||||||    
T  11421063 atcaaggtgatgactctttggatcagttttattttcttaagttacgacatcacccttttcatttagaagtt 11421133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 143 - 285
Target Start/End: Original strand, 28149970 - 28150112
Alignment:
Q  143 ccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggtt 242  Q
    ||||||||| |||||| ||||||||||| ||| ||||| | | || |||||||||||||||||||||||| |||| ||||||||| |||| |||||  ||    
T  28149970 ccataacaaggcctcttaccactcaagaagttcatgttaataacttgcaggaaactagtaacactaatgatgatcaaggtgaagagtcttaggatcaatt 28150069  T
Q  243 ttcttttcttaagttacctcatcgcccttttcattttgaagtt 285  Q
    || ||||||||||||| |||||| |||||||||||||||||||    
T  28150070 ttattttcttaagttatctcatcacccttttcattttgaagtt 28150112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 28151276 - 28151364
Alignment:
Q  19 tttcttgtattcttttttacactttgtcaataccggaattgaattataccacaatattgacaggttagcgaaataagtgttgaagaagg 107  Q
    ||||||||||||||||| ||||||||||| ||| | ||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  28151276 tttcttgtattctttttcacactttgtcagtacagaaattgaattatactacaatattgacaggttagcgaaataagtgttgaagaagg 28151364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 160 - 285
Target Start/End: Original strand, 27954347 - 27954471
Alignment:
Q  160 accactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggttttcttttcttaagttac 259  Q
    ||||||||| ||||||||| | ||||||||||||||||||||||||||||||| |||| ||||||| | |||||||||  || || ||||| ||||||||    
T  27954347 accactcaatatgttgatgataaaatctggcaggaaactagtaacactaatgatgatcaaggtgaaaactctttggattagtgttgttttcataagttac 27954446  T
Q  260 ctcatcgcccttttcattttgaagtt 285  Q
    ||||||  ||||||||||||||||||    
T  27954447 ctcatc-accttttcattttgaagtt 27954471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 142 - 238
Target Start/End: Complemental strand, 27458981 - 27458885
Alignment:
Q  142 gccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatc 238  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| || ||||| || |||| ||||||||| ||||||||||    
T  27458981 gccataacaaagcctcttaccactcaagatgttgatgttaaaatctggcaggaaactagcaagactaaggatgatcaaggtgaagactctttggatc 27458885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 189 - 285
Target Start/End: Original strand, 28161925 - 28162021
Alignment:
Q  189 gcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggttttcttttcttaagttacctcatcgcccttttcattttgaagtt 285  Q
    |||||||||||||||||||||||| |||| ||||||||| ||||||||||  |||| ||||||||||||| |||||| |||||||||||||||||||    
T  28161925 gcaggaaactagtaacactaatgatgatcaaggtgaagactctttggatcaattttattttcttaagttatctcatcacccttttcattttgaagtt 28162021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 160 - 279
Target Start/End: Complemental strand, 8539381 - 8539262
Alignment:
Q  160 accactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggttttcttttcttaagttac 259  Q
    ||||||||||||||||||||| || | ||||||||||||||||||||||||    ||| |||||||||||| ||||||| ||||| ||||||||||||||    
T  8539381 accactcaagatgttgatgttaaactttggcaggaaactagtaacactaatattaatcaaggtgaagaatccttggatcagttttattttcttaagttac 8539282  T
Q  260 ctcatcgcccttttcatttt 279  Q
    ||  || |||||||||||||    
T  8539281 cttgtcacccttttcatttt 8539262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 189 - 285
Target Start/End: Original strand, 28185968 - 28186064
Alignment:
Q  189 gcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggttttcttttcttaagttacctcatcgcccttttcattttgaagtt 285  Q
    ||||||||||||||||||| |||| |||| ||||||||| ||||||||||  |||| ||||||||||||| |||||| |||||||||||||||||||    
T  28185968 gcaggaaactagtaacactgatgatgatcaaggtgaagactctttggatcaattttattttcttaagttatctcatcacccttttcattttgaagtt 28186064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 160 - 285
Target Start/End: Original strand, 27920262 - 27920389
Alignment:
Q  160 accactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggttttcttttcttaag---t 256  Q
    ||||||||| ||||||||| | ||||||||||||||||||||||||||||||| |||| ||||||| | |||||||||  || || ||||| ||||   |    
T  27920262 accactcaatatgttgatgataaaatctggcaggaaactagtaacactaatgatgatcaaggtgaaaactctttggattagtgttgttttcataagcaat 27920361  T
Q  257 tacctcatcgcccttttcattttgaagtt 285  Q
    |||||||||  ||||||||||||||||||    
T  27920362 tacctcatc-accttttcattttgaagtt 27920389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 143 - 252
Target Start/End: Original strand, 27776525 - 27776634
Alignment:
Q  143 ccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggtt 242  Q
    |||||||||||||||  || |||||||||||||||||||||| || ||||||||||||||| ||||||||  ||| ||||||| | ||||||||||  ||    
T  27776525 ccataacaaagcctcctactactcaagatgttgatgttgaaaacttgcaggaaactagtaagactaatgatcatcaaggtgaaaactctttggatcaatt 27776624  T
Q  243 ttcttttctt 252  Q
    || |||||||    
T  27776625 ttattttctt 27776634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 208 - 285
Target Start/End: Complemental strand, 28479937 - 28479860
Alignment:
Q  208 aatgacgatcgaggtgaagaatctttggatcggttttcttttcttaagttacctcatcgcccttttcattttgaagtt 285  Q
    ||||| |||| ||||||||| ||||||||||  |||| ||||||||| |||||||||| |||||| ||||||||||||    
T  28479937 aatgatgatcaaggtgaagactctttggatcaattttattttcttaatttacctcatcaccctttgcattttgaagtt 28479860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 208 - 285
Target Start/End: Complemental strand, 28509120 - 28509043
Alignment:
Q  208 aatgacgatcgaggtgaagaatctttggatcggttttcttttcttaagttacctcatcgcccttttcattttgaagtt 285  Q
    ||||| |||| ||||||||| ||||||||||  |||| ||||||||| |||||||||| |||||| ||||||||||||    
T  28509120 aatgatgatcaaggtgaagactctttggatcaattttattttcttaatttacctcatcaccctttgcattttgaagtt 28509043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 208
Target Start/End: Original strand, 28056547 - 28056612
Alignment:
Q  143 ccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaactagtaacacta 208  Q
    ||||||||| |||||| ||||||||||| ||| ||||| | | || ||||||||||||||||||||    
T  28056547 ccataacaaggcctcttaccactcaagaagttcatgttaataacttgcaggaaactagtaacacta 28056612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 143 - 208
Target Start/End: Original strand, 28066972 - 28067037
Alignment:
Q  143 ccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaactagtaacacta 208  Q
    ||||||||| |||||| ||||||||||| ||| ||||| | | || ||||||||||||||||||||    
T  28066972 ccataacaaggcctcttaccactcaagaagttcatgttaataacttgcaggaaactagtaacacta 28067037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 28054960 - 28055011
Alignment:
Q  22 cttgtattcttttttacactttgtcaataccggaattgaattataccacaat 73  Q
    |||||||| ||||| ||||||||||||| | ||||||||||||||| |||||    
T  28054960 cttgtattttttttaacactttgtcaatgcaggaattgaattatactacaat 28055011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 28065385 - 28065436
Alignment:
Q  22 cttgtattcttttttacactttgtcaataccggaattgaattataccacaat 73  Q
    |||||||| ||||| ||||||||||||| | ||||||||||||||| |||||    
T  28065385 cttgtattttttttaacactttgtcaatgcaggaattgaattatactacaat 28065436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 8539756 - 8539704
Alignment:
Q  21 tcttgtattcttttttacactttgtcaataccggaattgaattataccacaat 73  Q
    ||||||||||||||| |||||||  |||| | ||||||||||||||| |||||    
T  8539756 tcttgtattctttttaacacttttccaatgcaggaattgaattatactacaat 8539704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 28149203 - 28149251
Alignment:
Q  25 gtattcttttttacactttgtcaataccggaattgaattataccacaat 73  Q
    ||||||||||  ||||||||||||| | ||||||||||||||| |||||    
T  28149203 gtattcttttgaacactttgtcaatgcaggaattgaattatactacaat 28149251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 107
Target Start/End: Original strand, 28161470 - 28161498
Alignment:
Q  79 caggttagcgaaataagtgttgaagaagg 107  Q
    |||||||||||||||||||||||||||||    
T  28161470 caggttagcgaaataagtgttgaagaagg 28161498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 142 - 282
Target Start/End: Original strand, 19079 - 19219
Alignment:
Q  142 gccataacaaagcctctaaccactcaagatgttgatgttgaaatctggcaggaaactagtaacactaatgacgatcgaggtgaagaatctttggatcggt 241  Q
    ||||||||||||||||| ||||||||||||||||||||| | | || ||||||||||||||||| || ||| |||| ||||||||| ||||||||||  |    
T  19079 gccataacaaagcctcttaccactcaagatgttgatgttaataacttgcaggaaactagtaacattattgatgatcaaggtgaagactctttggatcaat 19178  T
Q  242 tttcttttcttaagttacctcatcgcccttttcattttgaa 282  Q
     || |||||||||||||||||||| ||||||||||||||||    
T  19179 attattttcttaagttacctcatcacccttttcattttgaa 19219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 73
Target Start/End: Original strand, 18626 - 18672
Alignment:
Q  27 attcttttttacactttgtcaataccggaattgaattataccacaat 73  Q
    ||||||||| ||||||||||||| | ||||||||||||||| |||||    
T  18626 attctttttgacactttgtcaatgcaggaattgaattatactacaat 18672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0922 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 219 - 285
Target Start/End: Original strand, 1819 - 1885
Alignment:
Q  219 aggtgaagaatctttggatcggttttcttttcttaagttacctcatcgcccttttcattttgaagtt 285  Q
    ||||||||| | |||  ||||||||| ||||||||||||||| |||| |||||||||||||||||||    
T  1819 aggtgaagagtatttcaatcggttttattttcttaagttaccacatcacccttttcattttgaagtt 1885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 107
Target Start/End: Complemental strand, 9328820 - 9328792
Alignment:
Q  79 caggttagcgaaataagtgttgaagaagg 107  Q
    |||||||||||||||||||||||||||||    
T  9328820 caggttagcgaaataagtgttgaagaagg 9328792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 79 - 107
Target Start/End: Complemental strand, 9382597 - 9382569
Alignment:
Q  79 caggttagcgaaataagtgttgaagaagg 107  Q
    |||||||||||||||||||||||||||||    
T  9382597 caggttagcgaaataagtgttgaagaagg 9382569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University