View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13239_low_2 (Length: 621)
Name: NF13239_low_2
Description: NF13239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13239_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 511; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 16 - 603
Target Start/End: Complemental strand, 40854350 - 40853763
Alignment:
| Q |
16 |
ataaacaaaaataacactagctagaagctgatatcagttgaaacaacctaagaattgagtccactaaaatcaaagttgcacaagttaaccttagtaaaat |
115 |
Q |
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| T |
40854350 |
ataaacaaaaataacactagctagaagctgatatcagttgaaacaacctaagaattgagtccactaaaatcaaagttgtacaagttaaccttagtaaaat |
40854251 |
T |
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| Q |
116 |
atcttacactgtcaataaaagaaacatgattcctcatggcatcacaataatcccaaaaaatatcaggacgttttatgtttttaaattaccagacaacgcc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40854250 |
atcttacactgtcaataaaagaaacatgattcctcatgtcatcacaataatcccaaaaaatatcaggacgttttatgtttttaaattaccagacaacgcc |
40854151 |
T |
|
| Q |
216 |
atgggaaatgcaggatggccaatataggctaacaataccatacaatgcagaaaaataattaattcttgtgagactgacatattgacgaatcgaattacac |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40854150 |
atgggaaatgcaggatggccaatataggctaacaataccatacaatgcagaaaaataattaattcttgtgagactgacatattgacgagtcgaattacac |
40854051 |
T |
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| Q |
316 |
attttgaaatttccgctttttgatnnnnnnnnnnnnnnnnnnntgcatgcagggtttgtacggtgaagtgtggtcaaggaactctgatttccacaacctt |
415 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
40854050 |
attttgaaatttccgctttttgataaaaaagaaagaaaagaaatgcatgcagggtttgtacggtgaagtttggtcaaggaactctgatttccacaacctt |
40853951 |
T |
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| Q |
416 |
ccaatgtaaattcaaaaccaaacatgcattacatgaaaaaagacatacagaaatcagtaaaccgtttcttcggcaagtgcagaaactcagcatactcttg |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40853950 |
ccaatgtaaattcaaaaccaaacatgcattacatgaaaaaagacatacagaaatcagtaaaccgtttcttcggcaagtgcagaaactcagcatactcttg |
40853851 |
T |
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| Q |
516 |
taacccttcctctattctgtgcagttgcagtaccaacggcctccgcgtcacaatccctgaacatcacttcaaaatataagacataaaa |
603 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40853850 |
taacctttcctctattctgtgcagttgcagtaccaacggcctccgcgtcacaatccctgaacatcacttcaaaatataagacataaaa |
40853763 |
T |
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