View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13239_low_3 (Length: 604)
Name: NF13239_low_3
Description: NF13239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13239_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 562; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 562; E-Value: 0
Query Start/End: Original strand, 21 - 594
Target Start/End: Complemental strand, 45309141 - 45308568
Alignment:
| Q |
21 |
agggccatcttgatacctaaattgttgctttcattattctccatagaactaagtttattactcatgtcattaaatgcgttttctacgctttccatcaagt |
120 |
Q |
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| T |
45309141 |
agggccatcttgatacctaaattgttgctttcattattctccatagaactaagtttattactcatgtcattaaatgcgttttctacgctttccatcaagt |
45309042 |
T |
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| Q |
121 |
tcttcaccacaacatcaatataatctattgggtttgaggttttcacggggtagaggacatcatggcaaagtttatggtcatcagtgtctttgcataagga |
220 |
Q |
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| T |
45309041 |
tcttcaccacaacatcaatataatctattgggtttgaggttttcacggggtagaggacatcatggcaaagtttatggtcatcagtgtctttgcataagga |
45308942 |
T |
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| Q |
221 |
cttgacaaccttattagggattctaaactcattgaaattatcactgtggacaataccaaaagtaatattaataatcaagatgaggaaaaaggacgagact |
320 |
Q |
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| T |
45308941 |
cttgacaaccttattagggattctaaactcattgaaattatcactgtggacaataccaaaagtaatattaataatcaagatgaggaaaaaggacgagact |
45308842 |
T |
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| Q |
321 |
agcaatgttttagttttcattatatatatcttagtatgttacaatcttttatttctatctgtgatgattatataatgaaatcagttcaagagaaaaatag |
420 |
Q |
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| T |
45308841 |
agcaatgttttagttttcattatatatatcttagtatgttacaaactattatttctatctgtgatgattatataatgaaatcagttcaagagaaaaatag |
45308742 |
T |
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| Q |
421 |
atagataattacaacaaggataagtttcctttcttatatagttttgcgcgggtacgataatagaaaaacaatgcatgttgaacttcagttttatgaagat |
520 |
Q |
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| T |
45308741 |
atagataattacaacaaggataagtttcctttcttatatagttttgcgcgggtacgataatagaaaaacaatgcatgttgaacttcagttttatgaagat |
45308642 |
T |
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| Q |
521 |
aatagttatttgtgttgcttttgtgagatgaattttaatggacaataaattgtctgttataaatgtttcctttg |
594 |
Q |
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| T |
45308641 |
aatagttatttgtgttgcttttgtgagatgaattttaatggacaataaattgtctgttataaatgtttcttttg |
45308568 |
T |
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