View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13239_low_6 (Length: 412)
Name: NF13239_low_6
Description: NF13239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13239_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 16 - 393
Target Start/End: Complemental strand, 14266210 - 14265833
Alignment:
| Q |
16 |
attttaccactgacaaagaagtgcaagatttagtcaaggatctcacacctttgttggcattatgtgttgtcattaataatgttcaacctgttctttcagg |
115 |
Q |
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| T |
14266210 |
attttaccactgacaaagaagtgcaagatttagtcaaggatctcacacctttgttggcattatgtgttgtcattaataatgttcaacctgttctttcagg |
14266111 |
T |
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| Q |
116 |
taacacaattttgtgttaccatgattaaaatattcaagttgatcaatctagctcatcttcactaggaaaatttgaattattgacaaaaatatgaaactaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14266110 |
taacacaattttgtgttaccatgattaaaatattcaagttgatcaatctagctcatcttcactaggaaaatttgaattattgacaaaaatatgaaactaa |
14266011 |
T |
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| Q |
216 |
ttataatttcatgcaaattttaattttatgcaggggtggccattggggcaggatggcaagctgcagtggcctatgttaacattgcatgctactacctatt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14266010 |
ttataatttcatgcaaattttaattttatgcaggggtggccattggggcaggatggcaagctgcagtggcctatgttaacattgcatgctactacctatt |
14265911 |
T |
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| Q |
316 |
tggaattccagtgggtcttatattaggttacaaggttaacttgggagtcaaggtaaatcactgtccccttcatgtcta |
393 |
Q |
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| T |
14265910 |
tggaattccagtgggtcttatattaggttacaaggttaacttgggagtcaaggtaagtcattgtccccttcatgtcta |
14265833 |
T |
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