View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13239_low_7 (Length: 389)
Name: NF13239_low_7
Description: NF13239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13239_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 163; Significance: 6e-87; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 192 - 373
Target Start/End: Original strand, 13429899 - 13430081
Alignment:
| Q |
192 |
gcgagccgaagtcacccc-ctgaggggaaccatgtaattatgaagcataacatgtttcaaacttgtgaattgtggaattaaaatcctatctttgtcatac |
290 |
Q |
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| T |
13429899 |
gcgagccgaagtcacccccctgaggggaaccatgtaattctgaagcataacatgtttcaaacttgtcaattgtggaattaaaatcttatctttgtcatac |
13429998 |
T |
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| Q |
291 |
aaaaccacttgctagaaaacaaacaattatttggaatgctgaaattactagcaaaaactgttaccaccaaatgtgaaacataa |
373 |
Q |
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| T |
13429999 |
aaaaccacttgctagaaaacaaacaattatttggaatgctgaaattactagcaaaaactgttaccaccaaatgtgaaacataa |
13430081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 54 - 193
Target Start/End: Original strand, 13429271 - 13429407
Alignment:
| Q |
54 |
tggtttttcccggtcttgtcgtgtggtttgtttatgtttcggtcggagtttttgtttccgagtgtactaattcttattcaagagaatttcttgttccatg |
153 |
Q |
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| T |
13429271 |
tggtttttcccggtcttgtcgtgtggtttgtttatgtttcggtcggagtttttgtttccgagtgtactaattcttattcaagaggatttcttgttccata |
13429370 |
T |
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| Q |
154 |
ttcggtgcttttagaaaaatggatggatgttagttgttgc |
193 |
Q |
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| T |
13429371 |
t---gtgcttttggaaaaatggatggatgttaattgttgc |
13429407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 13429176 - 13429228
Alignment:
| Q |
1 |
ttcaatcattagatcatacatgtct---agtttttggctaggggttttgtttt |
50 |
Q |
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| T |
13429176 |
ttcaatcattagatcatacatgtctaggagtttttggttaggggttttttttt |
13429228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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