View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13239_low_9 (Length: 347)

Name: NF13239_low_9
Description: NF13239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13239_low_9
NF13239_low_9
[»] chr2 (1 HSPs)
chr2 (16-309)||(8504840-8505133)


Alignment Details
Target: chr2 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 16 - 309
Target Start/End: Original strand, 8504840 - 8505133
Alignment:
Q  16 atcaaccggcactctctaatcgtgtatttgtattttctttctcaatatttacctatgaatcaacttgcattatactatactttattgaattctcctctat 115  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8504840 atcaactggcactctctaatcgtgtatttgtattttctttctcaatatttacctatgaatcaacttgcattatactatactttattgaattctcctctat 8504939  T
Q  116 gattcggtgcaagtcataacatttatttgtaagcatagcttcttaaaatttctttcttatgccattacaagaaattgacaaattcagaatttgaattaat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8504940 gattcggtgcaagtcataacatttatttgtaagcatagcttcttaaaatttctttcttatgccattacaagaaattgacaaattcagaatttgaattaat 8505039  T
Q  216 tgtaacgcagcacctaaccctttacatttatatttttaagcttacgtaaaatttcccaagtcttacggccttgttgcttataataatcatagtc 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8505040 tgtaacgcagcacctaaccctttacatttatatttttaagcttacgtaaaatttcccaagtcttacggccttgttgcttataataatcatagtc 8505133  T

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