View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1323_high_11 (Length: 380)
Name: NF1323_high_11
Description: NF1323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1323_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 27426816 - 27427170
Alignment:
| Q |
1 |
acattggcctagagcaatcacataagtggcttcgacatcacatcttgaatcaaaaccatttgccatcagataaatgagtcatttgtcctaacaaataatg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27426816 |
acattggcctagagcaatcacataagtggcttcgacatcacatcttgaatcaaaaccatttgccatcagataaatgagtcatttgtcctaacaaataatg |
27426915 |
T |
|
| Q |
101 |
catcgccaaaatgaaggaatgaatatgacagctaaaggaaatttcttcaattgttgatacattagctgcacattactatcagtcattggtctgctagaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27426916 |
catcgccaaaatgaaggaatgaatatgacagctaaaggaaatttcttcaattgttgatacattagctgcacattactatcagtcattggtctgctagaag |
27427015 |
T |
|
| Q |
201 |
cataaattcaatggttgcgtgttataatgtcttctgcagtcaaaatcaatggctttctttatcataacagtttgcaggactagtactttgtgaagagcac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
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| T |
27427016 |
cataaattcaatggttgcgtgttataatgtcttctgcagtcaaaatcaatggctttctttatcataacagcttgcaggactagtactttgtgaatagcac |
27427115 |
T |
|
| Q |
301 |
ggaaagtccttttgattgaatagtcttcattgttgtatatatggtgggaattgat |
355 |
Q |
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| T |
27427116 |
ggaaagtccttttgattgaatagtcttcattgttgtatatatggtgggaattgat |
27427170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 124 - 318
Target Start/End: Original strand, 27416584 - 27416783
Alignment:
| Q |
124 |
tatgacagctaaaggaaatttcttcaattgttgatacattagctgcacattactatcagtcatt--ggtctgctagaagcataaattcaat---ggttgc |
218 |
Q |
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||||||||||||||||||| |||| |||||||| |||||| ||||||| ||||| ||||||| |||||| |||||| |||||||||| |||||| |
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| T |
27416584 |
tatgacagctaaaggaaatctctttaattgttggaacattatttgcacataactattagtcattttggtctgatagaagtttaaattcaatattggttgc |
27416683 |
T |
|
| Q |
219 |
gtgttataatgtcttctgcagtcaaaatcaatggctttctttatcataacagtttgcaggactagtactttgtgaagagcacggaaagtccttttgattg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
27416684 |
atgttataatgtcttctgcagtcaaaatcaatggctttctttatcataacagcttgcaggactagtactttgtgaatagcacggaaagtccttttgattg |
27416783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 124 - 318
Target Start/End: Complemental strand, 27565062 - 27564868
Alignment:
| Q |
124 |
tatgacagctaaaggaaatttcttcaattgttgatacattagctgcacattactatcagtcattggtctgctagaagcataaattcaatggttgcgtgtt |
223 |
Q |
| |
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||||||||||||||| |||||||| |||| ||||||||||| | |||||||||||| |||| |||||||||| ||||| ||||| |||||||||| |||| |
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| T |
27565062 |
tatgacagctaaagggaatttcttaaattcttgatacattatcggcacattactattagtcgttggtctgctggaagcttaaatccaatggttgcatgtt |
27564963 |
T |
|
| Q |
224 |
ataatgtcttctgcagtcaaaatcaatggctttctttatcataacagtttgcaggactagtactttgtgaagagcacggaaagtccttttgattg |
318 |
Q |
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|| |||||||||| ||| ||||||||||||| | ||| ||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
27564962 |
attatgtcttctgaagttaaaatcaatggctgtatttgtcataacagcttgcaggattagtactttgtgaatagcacggaaagtccttttgattg |
27564868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 208 - 330
Target Start/End: Original strand, 27584703 - 27584826
Alignment:
| Q |
208 |
tcaatggttgcgtgttataatgtcttctgcagtcaaaatcaatggctttctttatcataacagtttgcaggactagtactttgtgaagagcacggaaagt |
307 |
Q |
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|
||||||||||| |||||| |||||||||||||| ||||||||||||| | ||| ||| ||||| |||||||| ||||||||||| ||||||||||||||| |
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| T |
27584703 |
tcaatggttgcatgttattatgtcttctgcagttaaaatcaatggctgtatttgtcacaacagcttgcaggattagtactttgtaaagagcacggaaagt |
27584802 |
T |
|
| Q |
308 |
ccttttgattgaat-agtcttcat |
330 |
Q |
| |
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||||||||||| || ||||||||| |
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| T |
27584803 |
ccttttgattgtataagtcttcat |
27584826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 287 - 330
Target Start/End: Complemental strand, 27568888 - 27568845
Alignment:
| Q |
287 |
tttgtgaagagcacggaaagtccttttgattgaatagtcttcat |
330 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| | ||||||||| |
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| T |
27568888 |
tttgtgaatagcacggaaagtccttttgattgtacagtcttcat |
27568845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 46
Target Start/End: Complemental strand, 27565261 - 27565228
Alignment:
| Q |
13 |
agcaatcacataagtggcttcgacatcacatctt |
46 |
Q |
| |
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| T |
27565261 |
agcaatcacataagtggcttcgacaccacatctt |
27565228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 212
Target Start/End: Complemental strand, 27569015 - 27568931
Alignment:
| Q |
124 |
tatgacagctaaaggaaatttcttcaattgttgatacattagctgcacattacta-tcagtcattggtctgctagaagcataaattcaat |
212 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||| ||||||||||||| | |||||||||||| ||| ||| |||||||||| |
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| T |
27569015 |
tatgacagctcaaggaaatttcta-----gttgatacattatctgcacattactattaagtcattggtctcataggagcttaaattcaat |
27568931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 164
Target Start/End: Original strand, 27584662 - 27584702
Alignment:
| Q |
124 |
tatgacagctaaaggaaatttcttcaattgttgatacatta |
164 |
Q |
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||||||||||||||| |||||||| |||| ||||||||||| |
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| T |
27584662 |
tatgacagctaaagggaatttcttaaattcttgatacatta |
27584702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 34587873 - 34587918
Alignment:
| Q |
244 |
aatcaatggctttctttatcataacagtttgcaggactagtacttt |
289 |
Q |
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||||||||||||||||||||||||| | || |||||| |||||||| |
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| T |
34587873 |
aatcaatggctttctttatcataaccgcttacaggacaagtacttt |
34587918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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