View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1323_high_17 (Length: 325)
Name: NF1323_high_17
Description: NF1323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1323_high_17 |
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| [»] chr1 (3 HSPs) |
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| [»] scaffold0245 (1 HSPs) |
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| [»] scaffold0229 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 20 - 325
Target Start/End: Original strand, 1301616 - 1301921
Alignment:
| Q |
20 |
gacatcatcatacgattagcagatggcccagaagacagaatatggttaagtaacagtttatgaaataaaataatagctaaacttggtttgtaaattgaaa |
119 |
Q |
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| T |
1301616 |
gacatcataatacgattagcagatggcccagaagacagaatatggttaagtaacagtttatgaaataaaataatagctaaacttggtttgtaaattgaaa |
1301715 |
T |
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| Q |
120 |
caattttgagtttactatcaagtattattcacaagactgcattgccatattttgaagtcttaacattcatatttccctttctatcaagtaagaagactac |
219 |
Q |
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| T |
1301716 |
caattttgagtttactatcaagtattattcacaagactgcattgccatattttgaagtcttaacattcatatttccctttctatcaagtaagaagactac |
1301815 |
T |
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| Q |
220 |
atacatgcatctcatgtaatttgtacctagatgacctttgtaatttccacaagtcttacaaaatccttcattcaagcttataatactattagaagactgc |
319 |
Q |
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| T |
1301816 |
atacatgcatctcatgtaatttgtacctagatgacctttgtaatttccacaagtcttacaaaatccttcattcaagcttataatactattagaagactgc |
1301915 |
T |
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| Q |
320 |
acacct |
325 |
Q |
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|||||| |
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| T |
1301916 |
acacct |
1301921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 184 - 295
Target Start/End: Original strand, 1280734 - 1280845
Alignment:
| Q |
184 |
attcatatttccctttctatcaagtaagaagactacatacatgcatctcatgtaatttgtacctagatgacctttgtaatttccacaagtcttacaaaat |
283 |
Q |
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| T |
1280734 |
attcatatttccctttttaccaaataagaagactagatacttgcatcgcaagtaacttgtacctagatgacctttgtaatatccacaattattacaaaat |
1280833 |
T |
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| Q |
284 |
ccttcattcaag |
295 |
Q |
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| T |
1280834 |
ccttcattcaag |
1280845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 253 - 322
Target Start/End: Original strand, 1301918 - 1301987
Alignment:
| Q |
253 |
acctttgtaatttccacaagtcttacaaaatccttcattcaagcttataatactattagaagactgcaca |
322 |
Q |
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| T |
1301918 |
acctttgtaatttccacaagtcttacaaaatctttcattcaagcttataatactattagaagactgcaca |
1301987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0245 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0245
Description:
Target: scaffold0245; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 184 - 295
Target Start/End: Original strand, 6412 - 6523
Alignment:
| Q |
184 |
attcatatttccctttctatcaagtaagaagactacatacatgcatctcatgtaatttgtacctagatgacctttgtaatttccacaagtcttacaaaat |
283 |
Q |
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|||||||||||||||| || ||| ||||||||||| |||| |||||| || |||| |||||||||||||||||||||||| ||||||| | ||||||||| |
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| T |
6412 |
attcatatttccctttttaccaaataagaagactagatacttgcatcgcaagtaacttgtacctagatgacctttgtaatatccacaattattacaaaat |
6511 |
T |
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| Q |
284 |
ccttcattcaag |
295 |
Q |
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| T |
6512 |
ccttcattcaag |
6523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0229 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0229
Description:
Target: scaffold0229; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 184 - 295
Target Start/End: Original strand, 6742 - 6853
Alignment:
| Q |
184 |
attcatatttccctttctatcaagtaagaagactacatacatgcatctcatgtaatttgtacctagatgacctttgtaatttccacaagtcttacaaaat |
283 |
Q |
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|||||||||||||||| || ||| ||||||||||| |||| |||||| || |||| |||||||||||||||||||||||| ||||||| | ||||||||| |
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| T |
6742 |
attcatatttccctttttaccaaataagaagactagatacttgcatcgcaagtaacttgtacctagatgacctttgtaatatccacaattattacaaaat |
6841 |
T |
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| Q |
284 |
ccttcattcaag |
295 |
Q |
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|||||||||||| |
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| T |
6842 |
ccttcattcaag |
6853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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