View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1323_high_22 (Length: 279)
Name: NF1323_high_22
Description: NF1323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1323_high_22 |
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| [»] scaffold0618 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 30 - 269
Target Start/End: Complemental strand, 37111110 - 37110871
Alignment:
| Q |
30 |
gcacttctagtgaggagatattattcaagtgaggtaactacaaaagggaaccaagtaaatctcattgtgtgtcttgtgttgattattggatcttcaattg |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37111110 |
gcacttctagtgaggagatattattcaagtgaggtaactacaaaagggaaccaagtaaatctcattgtgtgtcttgtgttgattattggatcttcaattg |
37111011 |
T |
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| Q |
130 |
gactttcagcttcttgggctaacagtgagcatggatggattggatacgcaatctttgttccattgtggtttttagggacaggtgctctttggctttttgt |
229 |
Q |
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| T |
37111010 |
gactttcagcttcttgggctaacagtgagcatggatggattggatacgcaatctttgttccattgtggtttttagggacaggtgctctttggctttttgt |
37110911 |
T |
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| Q |
230 |
tccaatggcaaagaagcctaaactatggggagttcctttg |
269 |
Q |
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| T |
37110910 |
tccaatggcaaagaagcctaaactatggggagttcctttg |
37110871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 30 - 269
Target Start/End: Complemental strand, 37119365 - 37119123
Alignment:
| Q |
30 |
gcacttctagtgaggagatattattcaagtgaggtaactacaaaagggaaccaagtaaatctcattgtgtgtcttgtgttgattattggatcttcaattg |
129 |
Q |
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| T |
37119365 |
gcacttctagtaaggagatattattcaagtggggtaactacaaaaaggaaccaagtaaatctcattgtgtgtattttgttgattattggatcttcaattg |
37119266 |
T |
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| Q |
130 |
gactttcagcttcttgggctaa---cagtgagcatggatggattggatacgcaatctttgttccattgtggtttttagggacaggtgctctttggctttt |
226 |
Q |
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| T |
37119265 |
gaatttcagcttattgggctaatagtagtgagcataagtggattggatatacaatctttgttccattgtggtttttagggacaggtgctctttggctttt |
37119166 |
T |
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| Q |
227 |
tgttccaatggcaaagaagcctaaactatggggagttcctttg |
269 |
Q |
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| T |
37119165 |
tgttccaatggcaaagaagcctaagttatggggagttcctttg |
37119123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 125
Target Start/End: Original strand, 37136906 - 37136983
Alignment:
| Q |
48 |
tattattcaagtgaggtaactacaaaagggaaccaagtaaatctcattgtgtgtcttgtgttgattattggatcttca |
125 |
Q |
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| T |
37136906 |
tattattcaactggggtaactacaaaagataatcaagttaagctcattgtatgtgttgttttgattattggatcttca |
37136983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 146 - 264
Target Start/End: Original strand, 29258630 - 29258748
Alignment:
| Q |
146 |
ggctaacagtgagcatggatggattggatacgcaatctttgttccattgtggtttttagggacaggtgctctttggctttttgttccaatggcaaagaag |
245 |
Q |
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| T |
29258630 |
ggctaacaatgaacatggatagattgaatgcacaatttttgttccattgtggttttttggaaccggtggtctttggctttgtgttccaatggcaaagaag |
29258729 |
T |
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| Q |
246 |
cctaaactatggggagttc |
264 |
Q |
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| T |
29258730 |
cctaaattatggggagttc |
29258748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0618 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0618
Description:
Target: scaffold0618; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 146 - 251
Target Start/End: Original strand, 2960 - 3065
Alignment:
| Q |
146 |
ggctaacagtgagcatggatggattggatacgcaatctttgttccattgtggtttttagggacaggtgctctttggctttttgttccaatggcaaagaag |
245 |
Q |
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| T |
2960 |
ggctaacaatgaacatggatagattgaatgcacaatttttgttccattgtggttttttggaaccggtggtctttggctttgtgttccaatggcaaagaag |
3059 |
T |
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| Q |
246 |
cctaaa |
251 |
Q |
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| T |
3060 |
cctaaa |
3065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 201
Target Start/End: Complemental strand, 39509441 - 39509328
Alignment:
| Q |
87 |
aatctcattgtgtgtcttgtgttgattattggatcttcaattggactttcagcttcttgggctaacagtgagcatggatggattggatacgcaatctttg |
186 |
Q |
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|||||||||| ||||||| |||| ||| ||| ||||||||||| | |||| || || | ||||| |||||||||||| ||||| || | |||| |||| |
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| T |
39509441 |
aatctcattgggtgtcttttgttaattgttgtatcttcaattgaaacttcaagttattag-ctaacggtgagcatggatagattgaatgcacaatttttg |
39509343 |
T |
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| Q |
187 |
ttccattgtggtttt |
201 |
Q |
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| T |
39509342 |
ttccattgtggtttt |
39509328 |
T |
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