View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1323_high_24 (Length: 254)

Name: NF1323_high_24
Description: NF1323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1323_high_24
NF1323_high_24
[»] chr5 (2 HSPs)
chr5 (1-58)||(29501211-29501268)
chr5 (166-226)||(29501043-29501103)
[»] chr1 (5 HSPs)
chr1 (1-58)||(10758980-10759037)
chr1 (1-58)||(14267836-14267893)
chr1 (166-225)||(14268002-14268061)
chr1 (166-225)||(14646805-14646864)
chr1 (166-226)||(10759147-10759207)
[»] chr8 (1 HSPs)
chr8 (1-58)||(22717391-22717448)
[»] chr3 (1 HSPs)
chr3 (1-58)||(12484555-12484612)
[»] scaffold0056 (1 HSPs)
scaffold0056 (1-58)||(68443-68500)
[»] chr7 (2 HSPs)
chr7 (166-225)||(45484954-45485013)
chr7 (1-47)||(7115972-7116018)
[»] chr4 (1 HSPs)
chr4 (1-47)||(16601158-16601204)
[»] scaffold0020 (1 HSPs)
scaffold0020 (1-58)||(122753-122810)


Alignment Details
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 29501268 - 29501211
Alignment:
Q  1 caactaggttggcatcccactggaactcctatcctataccaactacttcatatatatt 58  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  29501268 caactacgttggcaccccactggaactcctatcctataccaactacttcatatatatt 29501211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 29501103 - 29501043
Alignment:
Q  166 cggtaattaggcaagtcatttctatctctagagaagttgaaagccagcagaggagataatt 226  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||    
T  29501103 cggtaattaggcaagtcatttctatctctagagaagtcgaaagccaacagaggaggtaatt 29501043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 10758980 - 10759037
Alignment:
Q  1 caactaggttggcatcccactggaactcctatcctataccaactacttcatatatatt 58  Q
    |||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||    
T  10758980 caactaggttggcaccccactggaactcctatcctataccgactactccatatatatt 10759037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 14267836 - 14267893
Alignment:
Q  1 caactaggttggcatcccactggaactcctatcctataccaactacttcatatatatt 58  Q
    ||||||||||||||||||||||||||||||||| |||||| |||||| ||||||||||    
T  14267836 caactaggttggcatcccactggaactcctatcttataccgactactccatatatatt 14267893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 166 - 225
Target Start/End: Original strand, 14268002 - 14268061
Alignment:
Q  166 cggtaattaggcaagtcatttctatctctagagaagttgaaagccagcagaggagataat 225  Q
    |||||||||||||||||||||||||| |||||||||| |||||||| |||||||| ||||    
T  14268002 cggtaattaggcaagtcatttctatccctagagaagtcgaaagccaacagaggaggtaat 14268061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 166 - 225
Target Start/End: Complemental strand, 14646864 - 14646805
Alignment:
Q  166 cggtaattaggcaagtcatttctatctctagagaagttgaaagccagcagaggagataat 225  Q
    ||||||||||||||| |||||||||| |||||||||| |||||||| |||||||| ||||    
T  14646864 cggtaattaggcaagccatttctatccctagagaagtcgaaagccaacagaggaggtaat 14646805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 226
Target Start/End: Original strand, 10759147 - 10759207
Alignment:
Q  166 cggtaattaggcaagtcatttctatctctagagaagttgaaagccagcagaggagataatt 226  Q
    ||||||||||||||| ||||||||||  ||||||||| |||||||| || ||||| |||||    
T  10759147 cggtaattaggcaagccatttctatccttagagaagtcgaaagccaacataggaggtaatt 10759207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 22717448 - 22717391
Alignment:
Q  1 caactaggttggcatcccactggaactcctatcctataccaactacttcatatatatt 58  Q
    |||||||||||||| |||||||||||| |||||||||||| |||||| ||||||||||    
T  22717448 caactaggttggcaccccactggaacttctatcctataccgactactccatatatatt 22717391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 12484612 - 12484555
Alignment:
Q  1 caactaggttggcatcccactggaactcctatcctataccaactacttcatatatatt 58  Q
    ||||||||||| || ||||||||||||||||||||||||| |||||| ||||||||||    
T  12484612 caactaggttgacaccccactggaactcctatcctataccgactactccatatatatt 12484555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 68500 - 68443
Alignment:
Q  1 caactaggttggcatcccactggaactcctatcctataccaactacttcatatatatt 58  Q
    ||||||||||| || ||||||||||||| ||||||||||| |||||| ||||||||||    
T  68500 caactaggttgtcaccccactggaactcgtatcctatacctactactccatatatatt 68443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 166 - 225
Target Start/End: Original strand, 45484954 - 45485013
Alignment:
Q  166 cggtaattaggcaagtcatttctatctctagagaagttgaaagccagcagaggagataat 225  Q
    ||||||||||| ||| |||||||||| |||||||||| |||||||| |||||||| ||||    
T  45484954 cggtaattaggaaagccatttctatccctagagaagtcgaaagccaacagaggaggtaat 45485013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 7116018 - 7115972
Alignment:
Q  1 caactaggttggcatcccactggaactcctatcctataccaactact 47  Q
    |||||||||||||| ||| || |||||||||||||||||| ||||||    
T  7116018 caactaggttggcaccccgcttgaactcctatcctataccgactact 7115972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 16601204 - 16601158
Alignment:
Q  1 caactaggttggcatcccactggaactcctatcctataccaactact 47  Q
    |||||||||||| ||||| |||||||| |||||||||||| ||||||    
T  16601204 caactaggttggtatcccgctggaacttctatcctataccgactact 16601158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 122753 - 122810
Alignment:
Q  1 caactaggttggcatcccactggaactcctatcctataccaactacttcatatatatt 58  Q
    |||||||||||||| || ||||||||||||||||| | ||| || || ||||||||||    
T  122753 caactaggttggcaccctactggaactcctatcctttgccaccttctacatatatatt 122810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University