View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1323_high_26 (Length: 252)
Name: NF1323_high_26
Description: NF1323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1323_high_26 |
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Alignment Details
Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 62 - 222
Target Start/End: Complemental strand, 17191291 - 17191120
Alignment:
| Q |
62 |
ttgttttggctaacacatgccaattaaacaaatgaatgagaggagccattaaaaacttgagaaaaatttgcgtatcagtttctctttctttcatttattt |
161 |
Q |
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| T |
17191291 |
ttgttttggctaacacatgccaattaaagaaataaacgagag---ccattaaaaactgaagaaaaatttgcgtatcaagttctctttctttcatttattt |
17191195 |
T |
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| Q |
162 |
--------------attgctaatggcgtcaatttctctttctttttcgtcttcaacatctttcattataacaatt |
222 |
Q |
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| T |
17191194 |
tgtgttatgttattattgctaatggcgtcaatttctctttctttttcgtcttcaacatctttcattataacaatt |
17191120 |
T |
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Target: chr6; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 17191384 - 17191318
Alignment:
| Q |
1 |
ttcaaagaatatttaatgatttattatatatttaaaaattaaaatgacagttgattcaacattgttt |
67 |
Q |
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| T |
17191384 |
ttcaaagaatatttaatgatttattatatatttaaaaattaaaatgacagttgattcaacattgttt |
17191318 |
T |
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