View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1323_high_28 (Length: 246)

Name: NF1323_high_28
Description: NF1323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1323_high_28
NF1323_high_28
[»] chr3 (15 HSPs)
chr3 (1-233)||(9369507-9369739)
chr3 (1-233)||(9347865-9348085)
chr3 (1-146)||(9340624-9340769)
chr3 (64-134)||(9352866-9352936)
chr3 (64-134)||(9377051-9377121)
chr3 (1-136)||(9617481-9617616)
chr3 (64-133)||(9614034-9614103)
chr3 (65-133)||(9494890-9494958)
chr3 (1-47)||(9646382-9646428)
chr3 (1-47)||(9655375-9655421)
chr3 (1-47)||(9626498-9626544)
chr3 (1-47)||(9695634-9695680)
chr3 (68-129)||(9343815-9343876)
chr3 (1-30)||(9613935-9613964)
chr3 (1-45)||(9485987-9486031)
[»] chr6 (5 HSPs)
chr6 (1-47)||(7029865-7029911)
chr6 (1-47)||(7025808-7025854)
chr6 (1-47)||(7041548-7041594)
chr6 (1-30)||(7012889-7012918)
chr6 (1-45)||(7046893-7046937)
[»] chr2 (1 HSPs)
chr2 (65-134)||(20694383-20694452)
[»] chr1 (2 HSPs)
chr1 (65-133)||(4439826-4439894)
chr1 (6-46)||(8814385-8814425)
[»] chr7 (1 HSPs)
chr7 (1-37)||(450129-450165)
[»] chr5 (1 HSPs)
chr5 (1-45)||(18571165-18571209)


Alignment Details
Target: chr3 (Bit Score: 164; Significance: 9e-88; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 9369739 - 9369507
Alignment:
Q  1 atgagaaggagaagaagtgggtgaagttgaggaatttcggggataggannnnnnncattgggcgtggatgttcgttttctgcttctgcttcagatctatg 100  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||       |||||||||||||||||||||||||||||||||||||||||||||    
T  9369739 atgagaaggagaagaagtgggtgaagttgaggcattttggggataggatttttttcattgggcgtggatgttcgttttctgcttctgcttcagatctatg 9369640  T
Q  101 cattccgaaaggaaattgtgtcgtctttattgacgaatccgtcctcggtattggcgatatgtttcgtcgaaaacgtgtttttcacttggatcaaaatcaa 200  Q
     ||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||| ||  |||||||| |||||||||||||||||||||    
T  9369639 tattccgaaaggaaattgtgtcgtctttattgacgaatccgtcctctgtattgacaatatgtttcatcagaaacgtgtatttcacttggatcaaaatcaa 9369540  T
Q  201 ctttcgtgtggggctaaatatcttaacttgttc 233  Q
    |||||  ||||||||||||||||||||||||||    
T  9369539 ctttcaggtggggctaaatatcttaacttgttc 9369507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 9348085 - 9347865
Alignment:
Q  1 atgagaaggagaagaagtgggtgaagttgaggaatttcggggataggannnnnnncattgggcgtggatgttcgttttctgcttctgcttcagatctatg 100  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||       |||||||||||||||||||||||||||||||||||||||||||||    
T  9348085 atgagaaggagaagaagtgggtgaagttgaggcattttggggataggatttttttcattgggcgtggatgttcgttttctgcttctgcttcagatctatg 9347986  T
Q  101 cattccgaaaggaaattgtgtcgtctttattgacgaatccgtcctcggtattggcgatatgtttcgtcgaaaacgtgtttttcacttggatcaaaatcaa 200  Q
     |||||||||||||||||||||||||||||||||||| |||||||| | |||| | ||            ||||||||||||||||||||||||||||||    
T  9347985 tattccgaaaggaaattgtgtcgtctttattgacgaaaccgtcctctggattgacaat------------aaacgtgtttttcacttggatcaaaatcaa 9347898  T
Q  201 ctttcgtgtggggctaaatatcttaacttgttc 233  Q
    |||||||||||||||||||||||||||||||||    
T  9347897 ctttcgtgtggggctaaatatcttaacttgttc 9347865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 9340769 - 9340624
Alignment:
Q  1 atgagaaggagaagaagtgggtgaagttgaggaatttcggggataggannnnnnncattgggcgtggatgttcgttttctgcttctgcttcagatctatg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||    
T  9340769 atgagaaggagaagaagtgggtgaagttgaggaatttcggggatagggtttttttcattgggcgtggatgttcgttttctgcttctgcttcagatctatg 9340670  T
Q  101 cattccgaaaggaaattgtgtcgtctttattgacgaatccgtcctc 146  Q
     ||||  |||||||||||||   |||| ||||||||||| ||||||    
T  9340669 tattcaaaaaggaaattgtgcaatcttcattgacgaatctgtcctc 9340624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 134
Target Start/End: Complemental strand, 9352936 - 9352866
Alignment:
Q  64 gtggatgttcgttttctgcttctgcttcagatctatgcattccgaaaggaaattgtgtcgtctttattgac 134  Q
    |||||||||||||||||||||||| ||  ||||| ||  |||| ||||||||||||||| |||||||||||    
T  9352936 gtggatgttcgttttctgcttctggttgggatctgtgtcttcccaaaggaaattgtgtcatctttattgac 9352866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 134
Target Start/End: Complemental strand, 9377121 - 9377051
Alignment:
Q  64 gtggatgttcgttttctgcttctgcttcagatctatgcattccgaaaggaaattgtgtcgtctttattgac 134  Q
    |||||||||||||| ||||||||||||  ||||| ||  |||| ||||||||||||||| |||||||||||    
T  9377121 gtggatgttcgtttcctgcttctgcttgggatctgtgtcttcccaaaggaaattgtgtcatctttattgac 9377051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 9617481 - 9617616
Alignment:
Q  1 atgagaaggagaagaagtgggtgaagttgaggaatttcggggataggannnnnnncattgggcgtggatgttcgttttctgcttctgcttcagatctatg 100  Q
    ||||||| |||||||| |||||||||||||  ||||| |||||||||        | ||| |  ||||||||| ||||||||||||||||||||| | ||    
T  9617481 atgagaaagagaagaaatgggtgaagttgaaaaatttaggggatagggttttgttccttgtgaatggatgttcattttctgcttctgcttcagatttgtg 9617580  T
Q  101 cattccgaaaggaaattgtgtcgtctttattgacga 136  Q
      || | ||||| ||||||||| |||||||||||||    
T  9617581 tgtttccaaagggaattgtgtcatctttattgacga 9617616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 133
Target Start/End: Original strand, 9614034 - 9614103
Alignment:
Q  64 gtggatgttcgttttctgcttctgcttcagatctatgcattccgaaaggaaattgtgtcgtctttattga 133  Q
    |||||||||| ||||||||||||||||||||||| ||  || | ||||||||||||||  ||||||||||    
T  9614034 gtggatgttcattttctgcttctgcttcagatctgtgtcttaccaaaggaaattgtgttatctttattga 9614103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 133
Target Start/End: Original strand, 9494890 - 9494958
Alignment:
Q  65 tggatgttcgttttctgcttctgcttcagatctatgcattccgaaaggaaattgtgtcgtctttattga 133  Q
    ||||||||||||||||||||||||||| ||| | ||| || | ||||| ||||||||| ||||||||||    
T  9494890 tggatgttcgttttctgcttctgcttctgatttgtgcgtttccaaagggaattgtgtcatctttattga 9494958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 9646382 - 9646428
Alignment:
Q  1 atgagaaggagaagaagtgggtgaagttgaggaatttcggggatagg 47  Q
    |||||||||||||||| ||||||||||||| |||||| |||||||||    
T  9646382 atgagaaggagaagaaatgggtgaagttgatgaatttaggggatagg 9646428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 9655375 - 9655421
Alignment:
Q  1 atgagaaggagaagaagtgggtgaagttgaggaatttcggggatagg 47  Q
    |||||||||||||||| ||||||||||||| |||||| |||||||||    
T  9655375 atgagaaggagaagaaatgggtgaagttgatgaatttaggggatagg 9655421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 9626498 - 9626544
Alignment:
Q  1 atgagaaggagaagaagtgggtgaagttgaggaatttcggggatagg 47  Q
    |||||||||||||||| |||||||| |||| |||||| |||||||||    
T  9626498 atgagaaggagaagaaatgggtgaatttgatgaatttaggggatagg 9626544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 9695634 - 9695680
Alignment:
Q  1 atgagaaggagaagaagtgggtgaagttgaggaatttcggggatagg 47  Q
    |||||||||||||||||||||| |||||||  ||||| |||||||||    
T  9695634 atgagaaggagaagaagtgggtcaagttgaccaatttaggggatagg 9695680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 129
Target Start/End: Complemental strand, 9343876 - 9343815
Alignment:
Q  68 atgttcgttttctgcttctgcttcagatctatgcattccgaaaggaaattgtgtcgtcttta 129  Q
    |||||||||||||||||||||||| ||| | ||  |||| | |||||||||||| |||||||    
T  9343876 atgttcgttttctgcttctgcttcggatttgtgtgttcctagaggaaattgtgttgtcttta 9343815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 9613935 - 9613964
Alignment:
Q  1 atgagaaggagaagaagtgggtgaagttga 30  Q
    ||||||||||||||||||||||||||||||    
T  9613935 atgagaaggagaagaagtgggtgaagttga 9613964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 9485987 - 9486031
Alignment:
Q  1 atgagaaggagaagaagtgggtgaagttgaggaatttcggggata 45  Q
    ||||||||||||||||||||||| || |||| ||||| |||||||    
T  9485987 atgagaaggagaagaagtgggtggaggtgagaaatttgggggata 9486031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 7029911 - 7029865
Alignment:
Q  1 atgagaaggagaagaagtgggtgaagttgaggaatttcggggatagg 47  Q
    |||||||||||||||||||||||||||||| || |||||||||||||    
T  7029911 atgagaaggagaagaagtgggtgaagttgacgagtttcggggatagg 7029865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 7025854 - 7025808
Alignment:
Q  1 atgagaaggagaagaagtgggtgaagttgaggaatttcggggatagg 47  Q
    |||||||||||||||||||||||||||||| || ||| || ||||||    
T  7025854 atgagaaggagaagaagtgggtgaagttgacgagtttaggagatagg 7025808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 7041594 - 7041548
Alignment:
Q  1 atgagaaggagaagaagtgggtgaagttgaggaatttcggggatagg 47  Q
    ||||||||||||||||||||||||||||||  | ||| |||||||||    
T  7041594 atgagaaggagaagaagtgggtgaagttgactagtttaggggatagg 7041548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 7012918 - 7012889
Alignment:
Q  1 atgagaaggagaagaagtgggtgaagttga 30  Q
    ||||||||||||||||||||||||||||||    
T  7012918 atgagaaggagaagaagtgggtgaagttga 7012889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 7046937 - 7046893
Alignment:
Q  1 atgagaaggagaagaagtgggtgaagttgaggaatttcggggata 45  Q
    |||||||||||||||||||||||||||| | || ||| |||||||    
T  7046937 atgagaaggagaagaagtgggtgaagttaacgagtttaggggata 7046893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 65 - 134
Target Start/End: Original strand, 20694383 - 20694452
Alignment:
Q  65 tggatgttcgttttctgcttctgcttcagatctatgcattccgaaaggaaattgtgtcgtctttattgac 134  Q
    ||||||||||||||||||||||||||| ||| | ||  || | ||||| ||||||||| |||||||||||    
T  20694383 tggatgttcgttttctgcttctgcttcggatttgtgtgttgccaaagggaattgtgtcatctttattgac 20694452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 133
Target Start/End: Complemental strand, 4439894 - 4439826
Alignment:
Q  65 tggatgttcgttttctgcttctgcttcagatctatgcattccgaaaggaaattgtgtcgtctttattga 133  Q
    ||||||||||||||||||||||||||| ||| | ||  || | ||||| ||||||||| ||||||||||    
T  4439894 tggatgttcgttttctgcttctgcttcggatttgtgtgtttctaaagggaattgtgtcatctttattga 4439826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 46
Target Start/End: Original strand, 8814385 - 8814425
Alignment:
Q  6 aaggagaagaagtgggtgaagttgaggaatttcggggatag 46  Q
    ||||||||||||||||||||||||  |||||| ||||||||    
T  8814385 aaggagaagaagtgggtgaagttggcgaatttaggggatag 8814425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 450129 - 450165
Alignment:
Q  1 atgagaaggagaagaagtgggtgaagttgaggaattt 37  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  450129 atgagaaggagaaaaagtgggtcaagttgaggaattt 450165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 18571209 - 18571165
Alignment:
Q  1 atgagaaggagaagaagtgggtgaagttgaggaatttcggggata 45  Q
    ||||||||||||||||||||||||| |||| || ||| |||||||    
T  18571209 atgagaaggagaagaagtgggtgaaattgacgagtttaggggata 18571165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University