View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1323_high_6 (Length: 508)
Name: NF1323_high_6
Description: NF1323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1323_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 30 - 478
Target Start/End: Complemental strand, 39275606 - 39275153
Alignment:
| Q |
30 |
caatcatcatggtggtggccacaatgactatgtctcagagcatgaggagtatgagtttgaagcttataaggaggagcgtgttggttctggcgcgagtaag |
129 |
Q |
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| T |
39275606 |
caatcatcatggtggtggccacaatgactatgtctcagagcatgaggagtatgagtttgaagcttacaaggaggagtgtgttggttctggcgcgagtaag |
39275507 |
T |
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| Q |
130 |
atggatgagatgagatatgagcgtcatggaacatatggaggagatgttcactatgctaatccatatggatacaataataacaacaggattaagcctcatg |
229 |
Q |
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| T |
39275506 |
atggatgagatgagatatgagcgtcatggaacatatggaggagatgttcactatgctaatccatatggatacaataataacaacaggattaagcctcatg |
39275407 |
T |
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| Q |
230 |
gttatggtcatggtcatggaagtcacaaagtcaattggacactcaagggggtctaatatgcgcatgcttgcttggttaccgttactacctctgg-----a |
324 |
Q |
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| T |
39275406 |
gtcatggtcatggtcatggaagtcacaaagtcaattggacactcaagggggtctaacatgcgcatgcttgcttggttactgttactacctctggatcgga |
39275307 |
T |
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| Q |
325 |
tcgagtatcaataaattgtgtgctttgtttgctgttttcatattttaataagttgccctgattataaatggtgcttcatatatatgatcaatgttatctg |
424 |
Q |
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| T |
39275306 |
tcgagtatcaataaattgtgtgctttgtttgctgttttcatattttaataatttgccctgattataaatggtgcttcctatatatgatcaatgttatctg |
39275207 |
T |
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| Q |
425 |
taactcattctgaagctatggaatatatgaacctttatatatatgatatgatta |
478 |
Q |
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| T |
39275206 |
taactcattctgaagctatgaaatatatggacttttatatatatgttatgatta |
39275153 |
T |
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