View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1323_low_1 (Length: 633)
Name: NF1323_low_1
Description: NF1323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1323_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 16 - 604
Target Start/End: Complemental strand, 44655457 - 44654868
Alignment:
| Q |
16 |
atactatcaacgtataatcgttggtgaacatatacattcattcataatcattcaattagatgacatgttagaagagatatctgaacgtacaaacatagac |
115 |
Q |
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| T |
44655457 |
atacaatcaacgtataatcattggtgaacatatacattcat----aatcattcaattagatgacatgtcagaagagatatctgaacgtacaaacatagac |
44655362 |
T |
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| Q |
116 |
aaatctactctaacatagacagatctataaacataataattatatgataataaacaagtcatgttcgacatcacaaa-atatcatatcaataagaacacg |
214 |
Q |
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| T |
44655361 |
aaatctactctaacatagacagatctataaacataataattatatgataataaacaagtcatgttcgacatcacaaagatatcatatcaataagaacatg |
44655262 |
T |
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| Q |
215 |
tgcatcaaacagaagccaatcctgcatgaataggcaatgccaaagaccaaatttaggtctagtatatgggacaaacattcatgacactatgcttcaaatt |
314 |
Q |
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| T |
44655261 |
tgcatcaaacagaagccaatcctgcatgaataggcaatgccaaagaccaaatttaggtctagtatatgggacaaacattcatgacactatgcttcaaatt |
44655162 |
T |
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| Q |
315 |
tttgcaggtttgggaagaaaagggaacgagttacannnnnnnnatggcataagttgtgtggctaatttgaaaaccaagaaatgatagaatatttaactca |
414 |
Q |
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|||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44655161 |
tttgcaggtttgggaagaaaagggaaagggttacattttttttatggcataagttgtgtggctaatttgaaaaccaagaaatgatagaatatttaactca |
44655062 |
T |
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| Q |
415 |
aaattgacttcgctggattgatgcaattaaaagatacattggagttggtttttgggtacaaaattgaattctccaggaatggtttacataagattgtatt |
514 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
44655061 |
aaattgacttcgctggattgatgcaattaaaagatacattggagttggtttttgggtacaaaattgaattctccatgaatggtttacataagattgtatt |
44654962 |
T |
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| Q |
515 |
ct----taaagtggttggcattttttgttgtaggcaaaccatatcttgggtatggtgactggtgagtatttcttagacttcatcacattttttg |
604 |
Q |
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| T |
44654961 |
cttagataaagtggttgacattttttgttgtaggcaaaccatatcttgggtatggtgactggtgactatttcttagacttcatcacattttttg |
44654868 |
T |
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