View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1323_low_10 (Length: 414)

Name: NF1323_low_10
Description: NF1323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1323_low_10
NF1323_low_10
[»] chr5 (3 HSPs)
chr5 (29-397)||(19828288-19828651)
chr5 (200-318)||(8589948-8590065)
chr5 (263-318)||(8589046-8589102)
[»] chr8 (3 HSPs)
chr8 (29-352)||(33137220-33137542)
chr8 (255-352)||(33136959-33137057)
chr8 (29-340)||(8085605-8085915)
[»] chr1 (3 HSPs)
chr1 (233-351)||(12658988-12659106)
chr1 (29-153)||(12664235-12664360)
chr1 (229-292)||(12658052-12658116)
[»] chr7 (2 HSPs)
chr7 (136-288)||(30334883-30335036)
chr7 (220-352)||(9024948-9025081)
[»] chr3 (2 HSPs)
chr3 (42-153)||(31313309-31313421)
chr3 (242-307)||(27647356-27647422)
[»] chr2 (4 HSPs)
chr2 (64-193)||(7580766-7580895)
chr2 (212-292)||(4732955-4733036)
chr2 (255-351)||(26511125-26511221)
chr2 (42-141)||(26511546-26511646)
[»] chr6 (1 HSPs)
chr6 (77-151)||(20996123-20996197)
[»] chr4 (1 HSPs)
chr4 (220-286)||(41982535-41982602)


Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-165; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 29 - 397
Target Start/End: Original strand, 19828288 - 19828651
Alignment:
Q  29 acttctatgagtcacacattaatgcatgtctatctcaaatggtcaacgtgtcttcttctaatgcttctggtcacgatttcaaatggtggagagttttttc 128  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||    
T  19828288 acttctatgagacacacattaatgcatgtgtatctcaaatggtcaacgtgtcttcttctaatgcttctgatcacggtttcaaatggtggagagttttttc 19828387  T
Q  129 atctccttattgtgctaccaaattattaatcgccccacaaccaccatgactagagcttctttaggacttaaatatgtaaaactatatttaaaatagcata 228  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||      ||||||||||||    
T  19828388 atctccttattgtgctaccaaatcattaatcgccccacaaccaccatgactagagcttctttaggactttaatatgtaaaac------taaaatagcata 19828481  T
Q  229 tgcttgtggacgaagaaaacaaagacaatttgaagtgg-ttttcacacttttgcatgaagaccttcgatgctacgttgaacatgcatgaaattttgtttc 327  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||    
T  19828482 tgcttgtggacgaagaaaacaaagacaatttgaagtggtttttcacacttttgaatgaagaccttcgatgctacgttgaacatgcatgaaatttcgtttc 19828581  T
Q  328 gaacatgcaaaaggttataaataacgggaggggattgtctcggtggaaatttcctcatattttctcctgt 397  Q
     |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  19828582 aaacatgcaaaaggttatagataacgggaggggattgtctcggtggaaatttcctcatgttttctcctgt 19828651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 200 - 318
Target Start/End: Original strand, 8589948 - 8590065
Alignment:
Q  200 atatgtaaaactatatttaaaatagcatatgcttgtggacgaagaaaacaaagacaatttgaagtggttttcacacttttgcatgaagaccttcgatgct 299  Q
    |||||||||| ||| |||| |||| |||| || |||||| | |||||| ||| | ||||| |||||||||  ||||||||||||||||| |||||| |||    
T  8589948 atatgtaaaattatttttataatatcataagcatgtggatgtagaaaaaaaa-agaatttaaagtggtttcaacacttttgcatgaagatcttcgaggct 8590046  T
Q  300 acgttgaacatgcatgaaa 318  Q
    | |||||| ||| ||||||    
T  8590047 atgttgaatatggatgaaa 8590065  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 318
Target Start/End: Complemental strand, 8589102 - 8589046
Alignment:
Q  263 gtggttttca-cacttttgcatgaagaccttcgatgctacgttgaacatgcatgaaa 318  Q
    |||||||||| ||||||||||||||||| || || ||||| ||||||||| ||||||    
T  8589102 gtggttttcaacacttttgcatgaagactttggaggctacattgaacatggatgaaa 8589046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 29 - 352
Target Start/End: Original strand, 33137220 - 33137542
Alignment:
Q  29 acttctatgagtcacacattaatgcatgtc-tatctcaaatggtcaacgtgtcttcttctaatgcttctggtcacgatttcaaatggtggagagtttttt 127  Q
    ||||| ||| || |||||||| |||||| | |||| |||| |||||||||||||||||||  ||||  | | ||| ||||||||||    |||||| |||    
T  33137220 acttccatgggtaacacattattgcatgccctatcgcaaacggtcaacgtgtcttcttctcttgctgttagccacaatttcaaatga---agagttcttt 33137316  T
Q  128 catctccttattgtgctaccaaattattaatcgccccacaaccaccatgactagagcttctttaggacttaaatatgtaaaactatatttaaaatagcat 227  Q
    |||||| ||||||||| |||||||   |||  ||| | ||||||||| |||| || |||||||| | |||   |||| |||  || ||||| ||||||||    
T  33137317 catctcattattgtgccaccaaatccctaactgccactcaaccaccaggactggaacttctttaaggctttcgtatgcaaatttacatttataatagcat 33137416  T
Q  228 atgcttgtggacgaagaaaacaaagacaatttgaagtggtttt-cacacttttgcatgaagaccttcgatgctacgttgaacatgcatgaaattttgttt 326  Q
    ||  |||||||   |||||||||||| |||||||||||||||| |||||||||||||||| |  || || | |||| |||||||| |||||| ||  | |    
T  33137417 atatttgtggatatagaaaacaaagagaatttgaagtggttttccacacttttgcatgaataaattggaggttacgctgaacatgaatgaaacttcatgt 33137516  T
Q  327 cgaacatgcaaaaggttataaataac 352  Q
    | ||||| |||||||| |||||||||    
T  33137517 caaacattcaaaaggtaataaataac 33137542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 255 - 352
Target Start/End: Complemental strand, 33137057 - 33136959
Alignment:
Q  255 aatttgaagtggttttca-cacttttgcatgaagaccttcgatgctacgttgaacatgcatgaaattttgtttcgaacatgcaaaaggttataaataac 352  Q
    |||||||| ||||||||| |||| |||| ||| |||||| ||||||||||| |||||| |||||| ||  |||| || ||||||||||| |||||||||    
T  33137057 aatttgaattggttttcaacactgttgcctgacgacctttgatgctacgttcaacatggatgaaacttcatttcaaatatgcaaaaggtaataaataac 33136959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 340
Target Start/End: Complemental strand, 8085915 - 8085605
Alignment:
Q  29 acttctatgagtcacacattaatgcatg-tctatctcaaatggtcaacgtgtcttcttctaatgcttctggtcacgatttcaaatggtggagagtttttt 127  Q
    |||| |||| || ||||||||||||||  |||||||| ||  || ||||||||||||||| ||||  || | |||  ||| |||| ||| |||||| ||     
T  8085915 acttatatgggttacacattaatgcatactctatctcgaacagttaacgtgtcttcttctcatgccgctagccacatttttaaatagtgaagagttcttc 8085816  T
Q  128 catctccttattgtgctaccaaattattaatcgccccacaaccaccatgactagagcttctttaggacttaaatatgtaaaactatatttaaaatagcat 227  Q
    |||||||| ||||| ||| ||||| | |||  ||||  ||| ||| | || | ||||||||||||| |||  ||||| |||| ||  |||| |||| |||    
T  8085815 catctcctcattgtactatcaaatcactaactgcccttcaatcactaagattggagcttctttagggctttcatatgcaaaattacgtttataatatcat 8085716  T
Q  228 atgcttgtggacgaagaaaacaaagacaatttgaagtg--gttttcacacttttgcatgaagaccttcgatgctacgttgaacatgcatgaaattttgtt 325  Q
    |||| |||||||| |||||||    | |||||||| ||   |||| |||||||||||||||||| || || ||||| || | |||| ||||||  || ||    
T  8085715 atgcctgtggacgtagaaaac----agaatttgaaatgatttttttacacttttgcatgaagacattggacgctacattaagcatgaatgaaacattatt 8085620  T
Q  326 tcgaacatgcaaaag 340  Q
    || ||||| ||||||    
T  8085619 tcaaacatccaaaag 8085605  T

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Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 233 - 351
Target Start/End: Original strand, 12658988 - 12659106
Alignment:
Q  233 tgtggacgaagaaaacaaagacaatttgaagtggttttca-cacttttgcatgaagaccttcgatgctacgttgaacatgcatgaaattttgtttcgaac 331  Q
    |||||| | |||||||||||| |||||||||||||||||| ||||||||||||||||||||||| | ||||||||||||| |||||||||  |||| |||    
T  12658988 tgtggatgtagaaaacaaagagaatttgaagtggttttcaacacttttgcatgaagaccttcgaggatacgttgaacatggatgaaatttcatttcaaac 12659087  T
Q  332 atgcaaaaggttataaataa 351  Q
    ||| |||| || ||||||||    
T  12659088 atg-aaaatgtaataaataa 12659106  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 153
Target Start/End: Original strand, 12664235 - 12664360
Alignment:
Q  29 acttctatgagtcacacattaatgcatgtc-tatctcaaatggtcaacgtgtcttcttctaatgcttctggtcacgatttcaaatggtggagagtttttt 127  Q
    |||| |||| || |||||||||||||| || |||||||||   |||||||||||| |||| ||| | || | ||| ||||||||||||||| | || |||    
T  12664235 acttatatgggttacacattaatgcatatcatatctcaaactatcaacgtgtctttttctcatgttgctagccacaatttcaaatggtggataattcttt 12664334  T
Q  128 catctccttattgtgctaccaaatta 153  Q
    ||| | |||||||||||| |||||||    
T  12664335 cattttcttattgtgctatcaaatta 12664360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 292
Target Start/End: Complemental strand, 12658116 - 12658052
Alignment:
Q  229 tgcttgtggacgaagaaaacaaagacaatttgaagtggttttc-acacttttgcatgaagacctt 292  Q
    |||||||| | | |||||||||||| ||||||||  ||||||| |||||||| ||||||||||||    
T  12658116 tgcttgtgcatgtagaaaacaaagagaatttgaaagggttttcaacacttttacatgaagacctt 12658052  T

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Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 136 - 288
Target Start/End: Original strand, 30334883 - 30335036
Alignment:
Q  136 tattgtgctaccaaattattaatcgccccacaaccaccatgactagagcttctttaggacttaaatatgtaaaactatatttaaaatagcatatgcttgt 235  Q
    |||||||||| ||||| | |||||| ||| |||||||||  ||| ||||||||||| | |||  ||||| |||| ||| ||||  ||| |||||||||||    
T  30334883 tattgtgctatcaaatcactaatcgtccctcaaccaccaacactggagcttctttaaggctttcatatgcaaaattatgtttatgataacatatgcttgt 30334982  T
Q  236 ggacgaagaaaacaaagacaatttgaagtggtttt-cacacttttgcatgaaga 288  Q
    ||| | |||||||||||| ||||| |||||||||| ||||||||||||| ||||    
T  30334983 ggatgtagaaaacaaagagaatttcaagtggttttccacacttttgcatcaaga 30335036  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 220 - 352
Target Start/End: Original strand, 9024948 - 9025081
Alignment:
Q  220 aatagcatatgcttgtggacgaagaaaacaaagacaatttgaagtggttttca-cacttttgcatgaagaccttcgatgctacgttgaacatgcatgaaa 318  Q
    ||||||||||| ||||||| | |||||||| ||| |  ||||||||||||||| |||||||||||||| ||||| ||  |||||||||| ||| ||||||    
T  9024948 aatagcatatgtttgtggatgtagaaaacagagagatattgaagtggttttcaacacttttgcatgaacaccttggagactacgttgaagatggatgaaa 9025047  T
Q  319 ttttgtttcgaacatgcaaaaggttataaataac 352  Q
     ||  |||| ||||||||||| || |||||||||    
T  9025048 cttcatttcaaacatgcaaaaagtaataaataac 9025081  T

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Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 42 - 153
Target Start/End: Original strand, 31313309 - 31313421
Alignment:
Q  42 acacattaatgcatgtc-tatctcaaatggtcaacgtgtcttcttctaatgcttctggtcacgatttcaaatggtggagagttttttcatctccttattg 140  Q
    ||||||||||||||  | |||| |||| ||||||| ||||||||||| ||| | || | || ||||||||||| || |||||| |||||||||||| |||    
T  31313309 acacattaatgcataccatatcccaaacggtcaacatgtcttcttctcatgttgctagccatgatttcaaatgatgaagagttctttcatctcctttttg 31313408  T
Q  141 tgctaccaaatta 153  Q
    |||||||||||||    
T  31313409 tgctaccaaatta 31313421  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 307
Target Start/End: Original strand, 27647356 - 27647422
Alignment:
Q  242 agaaaacaaagacaatttgaagtggttttca-cacttttgcatgaagaccttcgatgctacgttgaa 307  Q
    |||||||||| | ||||| |||| ||||||| ||||||||||||| |||||| || |||||||||||    
T  27647356 agaaaacaaaaagaattttaagtagttttcaacacttttgcatgacgacctttgaggctacgttgaa 27647422  T

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Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 64 - 193
Target Start/End: Complemental strand, 7580895 - 7580766
Alignment:
Q  64 caaatggtcaacgtgtcttcttctaatgcttctggtcacgatttcaaatggtggagagttttttcatctccttattgtgctaccaaattattaatcgccc 163  Q
    |||||||||||| | ||||||||  |||||  | | ||||||||||||||||| |||||| |||||| || |||||| |||||||||| | |||| | ||    
T  7580895 caaatggtcaacatttcttcttcacatgctggttgccacgatttcaaatggtgaagagttctttcatatctttattgcgctaccaaatcactaattggcc 7580796  T
Q  164 cacaaccaccatgactagagcttctttagg 193  Q
    | ||||||| | || |||||||| ||||||    
T  7580795 ctcaaccactaggattagagcttttttagg 7580766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 212 - 292
Target Start/End: Original strand, 4732955 - 4733036
Alignment:
Q  212 atatttaaaatagcatatgcttgtggacgaagaaaacaaagacaatttgaagtgg-ttttcacacttttgcatgaagacctt 292  Q
    ||||||| |||| |||||| ||||||| | |||||||||||| |||||  ||||| |||| ||||||||||| |||||||||    
T  4732955 atatttataataacatatgtttgtggatgtagaaaacaaagagaatttatagtggtttttaacacttttgcacgaagacctt 4733036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 351
Target Start/End: Complemental strand, 26511221 - 26511125
Alignment:
Q  255 aatttgaagtggttttcacacttttgcatgaagaccttcgatgctacgttgaacatgcatgaaattttgtttcgaacatgcaaaaggttataaataa 351  Q
    |||||||||||||||  ||||||||||||||||||||| ||  |||| || |||||  ||||| |||  |||| |||||||| || || ||||||||    
T  26511221 aatttgaagtggtttcaacacttttgcatgaagaccttggagactacattcaacatagatgaagtttcatttcaaacatgcagaatgtaataaataa 26511125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 141
Target Start/End: Original strand, 26511546 - 26511646
Alignment:
Q  42 acacattaatgcatgtct-atctcaaatggtcaacgtgtcttcttctaatgcttctggtcacgatttcaaatggtggagagttttttcatctccttattg 140  Q
    |||||||||||||||| | ||| ||||  ||||||||||||| |||| | ||| || |||||||||| |||||||| | |||| ||| ||||| ||||||    
T  26511546 acacattaatgcatgtttgatcacaaactgtcaacgtgtcttattctcacgctgctagtcacgattttaaatggtgaaaagttcttttatctctttattg 26511645  T
Q  141 t 141  Q
    |    
T  26511646 t 26511646  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 77 - 151
Target Start/End: Complemental strand, 20996197 - 20996123
Alignment:
Q  77 tgtcttcttctaatgcttctggtcacgatttcaaatggtggagagttttttcatctccttattgtgctaccaaat 151  Q
    ||||||||||| |||||||| | ||| |||| |||||||| |||||| ||||||||| |||||||||||| ||||    
T  20996197 tgtcttcttctcatgcttctagccacaattttaaatggtgaagagttctttcatctctttattgtgctacaaaat 20996123  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 220 - 286
Target Start/End: Original strand, 41982535 - 41982602
Alignment:
Q  220 aatagcatatgcttgtggacgaagaaaacaaagacaatttgaagtgg-ttttcacacttttgcatgaa 286  Q
    ||||||||||||||| | | | |||||||||||| |||||||||||| |||| |||||||||||||||    
T  41982535 aatagcatatgcttgggaatgtagaaaacaaagagaatttgaagtggtttttaacacttttgcatgaa 41982602  T

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