View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1323_low_11 (Length: 395)
Name: NF1323_low_11
Description: NF1323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1323_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 110 - 383
Target Start/End: Original strand, 69683 - 69956
Alignment:
| Q |
110 |
ggttggtgggtggatttgatctgagttagttagttagaatgtcgaacatagacattgaagggatcttgaatcaactacctaacgatggtcgtgttcctaa |
209 |
Q |
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| T |
69683 |
ggttggtgggtggatttgatctgagttagttagttagaatgtcgaacatagacattgaagggatcttgaatcaactacctaacgatggtcgtgttcctaa |
69782 |
T |
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| Q |
210 |
gaccaagattgtttgtactttgggtcctgcttccagatctgttgagatgattgagaagcttcttaaagctggtatgaatgttgctcgtttcaatttctca |
309 |
Q |
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| T |
69783 |
gaccaagattgtttgtactttgggtcctgcttccagatctgttgagatgattgagaagcttcttaaagctggtatgaatgttgctcgtttcaatttctca |
69882 |
T |
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| Q |
310 |
catggtactcatcaatatcatcaggaaacccttgataatctcaagtctgctatgcactctactggtattctctg |
383 |
Q |
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| T |
69883 |
catggtactcatcaatatcatcaggaaacccttgataatctcaagtctgctatgcactctactggtattctctg |
69956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 69580 - 69650
Alignment:
| Q |
30 |
attgatatactgttacttagtatttgattctcatcacttgtcttgttttgtgtttatttagcattactaca |
100 |
Q |
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| T |
69580 |
attgatatactgttacttagtatttgattctcatcacttgtcttgttttgtgtttatttagcattactaca |
69650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 262 - 350
Target Start/End: Complemental strand, 32427647 - 32427559
Alignment:
| Q |
262 |
gagaagcttcttaaagctggtatgaatgttgctcgtttcaatttctcacatggtactcatcaatatcatcaggaaacccttgataatct |
350 |
Q |
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| T |
32427647 |
gagaagcttctacaagcaggcatgaatgtcgctcgtttcaacttctctcatggttcctatgaatatcatcaggaaacgcttgataatct |
32427559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 280 - 350
Target Start/End: Complemental strand, 32421792 - 32421722
Alignment:
| Q |
280 |
ggtatgaatgttgctcgtttcaatttctcacatggtactcatcaatatcatcaggaaacccttgataatct |
350 |
Q |
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| T |
32421792 |
ggtatgaacgttgccagattcaacttctctcatggttctcatgactatcatcaggaaactcttgataatct |
32421722 |
T |
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