View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1323_low_12 (Length: 390)
Name: NF1323_low_12
Description: NF1323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1323_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 2e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 16 - 296
Target Start/End: Complemental strand, 37329597 - 37329316
Alignment:
| Q |
16 |
atgtcaggcttaaaaggaccaatnnnnnnn-tgggatgactttgaaaaggaagagagaatggaaaagagagagaaatcattcgccttatctgaaagagtg |
114 |
Q |
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| T |
37329597 |
atgtcaggcttaaaaggaccaataaaaaaaatgggatgactttgaaagggaagagagaaaggaaaagagagagaaatcattcgccttaattgaaagagtg |
37329498 |
T |
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| Q |
115 |
atattgaagttgatgaaagagtaatgactttgattttccactataacnnnnnnnnnnnnntatgtgaaagttatttaaaatcatgtaaaatccccaaact |
214 |
Q |
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|||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
37329497 |
atatggaagatgatgaaagagtaatgactttgattttccactataacaaaaaatgaaaaatatgtgaaagttatttaaaatcatgtaaaatccccaaact |
37329398 |
T |
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| Q |
215 |
cctctctcaatgcactttgcctgcctcaagttgaagggttatgatcgagtgatgcaaaaaactttaatgcaacgagactact |
296 |
Q |
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||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||| |||||||||||||||||||| |
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| T |
37329397 |
cctctctcaatgcactttgcctgcctcaaattgaagggttttgatcgagtgaagcaaaaaaatttaatgcaacgagactact |
37329316 |
T |
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