View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1323_low_15 (Length: 367)
Name: NF1323_low_15
Description: NF1323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1323_low_15 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 93 - 367
Target Start/End: Complemental strand, 38953777 - 38953495
Alignment:
| Q |
93 |
aatcaattggtaacatgtactagcatcaatgtcagagtatagtagagacactagcagtggcatctaagactcagggaaaagctagagctcaacaatttga |
192 |
Q |
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| T |
38953777 |
aatcaattggtaacatgtactagcatcaatgtcagagtatagttgagacactagcagtggcatctaagactcagggaaaagctagagctcaacaatttga |
38953678 |
T |
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| Q |
193 |
cactaagagtagtaataataaaaaagcagcttattgttcaatcaaaattgtaggattccaatcccttttctgttac---nnnnnnnnnnnnnnnnctaat |
289 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
38953677 |
cactaagagtagtaataataaaaaagcagcttattgttcaatcaaaattgtaggattccaatcccttttctgttacttttttcattttttttcttctaat |
38953578 |
T |
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| Q |
290 |
actgt-----taatataagtgatgtcacagaattaacaaatttaggaatgaaaacacatcttcagtcaacattctgactctat |
367 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38953577 |
actgttaatataatataagtgatgtcacagaattaacaaatttaggaatgaaaacacatcttcagtcaacattctgactctat |
38953495 |
T |
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