View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1323_low_16 (Length: 359)

Name: NF1323_low_16
Description: NF1323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1323_low_16
NF1323_low_16
[»] chr4 (15 HSPs)
chr4 (46-331)||(3749301-3749586)
chr4 (46-301)||(5858443-5858698)
chr4 (48-272)||(5582905-5583129)
chr4 (46-242)||(5847705-5847901)
chr4 (58-302)||(5570708-5570952)
chr4 (46-242)||(5885920-5886116)
chr4 (62-273)||(5565207-5565418)
chr4 (53-242)||(5894772-5894961)
chr4 (62-242)||(5605556-5605736)
chr4 (47-273)||(5553616-5553842)
chr4 (48-301)||(5852581-5852834)
chr4 (46-313)||(5559376-5559643)
chr4 (46-243)||(5538833-5539030)
chr4 (46-159)||(5613627-5613740)
chr4 (46-110)||(251993-252057)
[»] chr8 (1 HSPs)
chr8 (46-231)||(1485703-1485888)
[»] scaffold0454 (1 HSPs)
scaffold0454 (46-231)||(884-1070)


Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 46 - 331
Target Start/End: Complemental strand, 3749586 - 3749301
Alignment:
46 atgaattgagcaatgctttgttgccgttgcgtgacttgcaggaattgagcatgtcttactgtgatttatcaggaccccttgattcttccctaacaagact 145  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
3749586 atgaattgagcaatgctttgttgccgttgcgtgacttgcaagaattgagcatgtcttactgtgatttatcaggaccccttgattcttccctaacaagact 3749487  T
146 agagaacctatcagtcattattcttgatgggaacaatttttcatcaccagtgccgaaaacatttgccaattttaaaaacttgaccaccctcagtcttgcg 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
3749486 agagaacctatcagtcattattcttgatgggaacaatttttcatcaccagtgccgaaaacatttgccaattttaaaaacttgaccaccctcagtcttgcg 3749387  T
246 ctttgtgaattgaccggtacatttccacgtgcaatctttcagattggaacactgtcaactattgacttgtttaacaacaaaaatct 331  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
3749386 ctttgtgaattgaccggtacatttccacatgcaatctttcagattggaacactgtcaactattgacttgtttaacaacaaaaatct 3749301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 46 - 301
Target Start/End: Complemental strand, 5858698 - 5858443
Alignment:
46 atgaattgagcaatgctttgttgccgttgcgtgacttgcaggaattgagcatgtcttactgtgatttatcaggaccccttgattcttccctaacaagact 145  Q
    |||||| || |||||||||||||||||||||  || | || |||||||||||||||| ||||| | ||| ||| |||||||||||||||||||||| |||    
5858698 atgaatggatcaatgctttgttgccgttgcgaaacctacaagaattgagcatgtcttcctgtggtctattaggtccccttgattcttccctaacaaaact 5858599  T
146 agagaacctatcagtcattattcttgatgggaacaatttttcatcaccagtgccgaaaacatttgccaattttaaaaacttgaccaccctcagtcttgcg 245  Q
    ||||||||||||||||||||||||||||| |||| |||||||||| ||||| ||  |||||||||| ||||||||||||||||| ||||||||||||||     
5858598 agagaacctatcagtcattattcttgatgagaactatttttcatccccagttcctgaaacatttgcaaattttaaaaacttgactaccctcagtcttgca 5858499  T
246 ctttgtgaattgaccggtacatttccacgtgcaatctttcagattggaacactgtc 301  Q
     |||||| |||  |||||||||||||||     |||||||||||||||||| ||||    
5858498 ttttgtgcattatccggtacatttccacagaagatctttcagattggaacattgtc 5858443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 48 - 272
Target Start/End: Original strand, 5582905 - 5583129
Alignment:
48 gaattgagcaatgctttgttgccgttgcgtgacttgcaggaattgagcatgtcttactgtgatttatcaggaccccttgattcttccctaacaagactag 147  Q
    |||| ||| ||||||||||||||  ||| | || | || | |||||| |||||||| |||||| ||||||| |||||||||||||||||||||||||||     
5582905 gaatggaggaatgctttgttgcccctgcctaacctccaagtattgagtatgtcttattgtgatctatcaggtccccttgattcttccctaacaagactaa 5583004  T
148 agaacctatcagtcattattcttgatgggaacaatttttcatcaccagtgccgaaaacatttgccaattttaaaaacttgaccaccctcagtcttgcgct 247  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||| ||||||| ||||| || |||||||||||||||||       
5583005 agaacctatcagtcattattcttgatgggaacaatttttcatccccagtgccacaaacattttccaatttcaaaaaattaaccaccctcagtcttgcatc 5583104  T
248 ttgtgaattgaccggtacatttcca 272  Q
    ||||| |||||| |||| |||||||    
5583105 ttgtggattgactggtaaatttcca 5583129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 46 - 242
Target Start/End: Original strand, 5847705 - 5847901
Alignment:
46 atgaattgagcaatgctttgttgccgttgcgtgacttgcaggaattgagcatgtcttactgtgatttatcaggaccccttgattcttccctaacaagact 145  Q
    |||||| |||||||||||||||||| ||||||||| ||||  | |||||||||||| | |||||| ||||||||||||||||||||||||||||||||||    
5847705 atgaatggagcaatgctttgttgcctttgcgtgacctgcaaaagttgagcatgtctgattgtgatctatcaggaccccttgattcttccctaacaagact 5847804  T
146 agagaacctatcagtcattattcttgatgggaacaatttttcatcaccagtgccgaaaacatttgccaattttaaaaacttgaccaccctcagtctt 242  Q
    |||||||||  | |||||| |||||| || |||||| |||||||| ||||||||  ||||||||||||||||||||||| | |||||||||| ||||    
5847805 agagaacctgacggtcattgttcttggtgagaacaacttttcatccccagtgccacaaacatttgccaattttaaaaacctaaccaccctcaatctt 5847901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 58 - 302
Target Start/End: Original strand, 5570708 - 5570952
Alignment:
58 atgctttgttgccgttgcgtgacttgcaggaattgagcatgtcttactgtgatttatcaggaccccttgattcttccctaacaagactagagaacctatc 157  Q
    |||||||||| ||| ||||| || | || | |||||| |||||||| |||||| ||||||||||||||  ||||||||||||||||||| ||||||||||    
5570708 atgctttgtttccgctgcgtaacctccaagtattgagtatgtcttattgtgatctatcaggacccctttcttcttccctaacaagactaaagaacctatc 5570807  T
158 agtcattattcttgatgggaacaatttttcatcaccagtgccgaaaacatttgccaattttaaaaacttgaccaccctcagtcttgcgctttgtgaattg 257  Q
    |||||||||||||||||||||| |||| ||||| | ||||||  |||||||| |||||||||||||  | ||||||||||||||| |   ||||| ||||    
5570808 agtcattattcttgatgggaactatttctcatccctagtgccagaaacattttccaattttaaaaaactaaccaccctcagtctttcatcttgtggattg 5570907  T
258 accggtacatttccacgtgcaatctttcagattggaacactgtca 302  Q
    || |||||||||||||     |||||||| ||||||||| |||||    
5570908 acaggtacatttccacaaaatatctttcaaattggaacattgtca 5570952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 46 - 242
Target Start/End: Original strand, 5885920 - 5886116
Alignment:
46 atgaattgagcaatgctttgttgccgttgcgtgacttgcaggaattgagcatgtcttactgtgatttatcaggaccccttgattcttccctaacaagact 145  Q
    |||||| ||| ||||||||||| ||| ||||||||||||| || |||||||||| | |||||  | ||||||||||||||||||| |||||  ||| |||    
5885920 atgaatggagtaatgctttgttaccgctgcgtgacttgcaagagttgagcatgtataactgtagtctatcaggaccccttgattcctccctttcaaaact 5886019  T
146 agagaacctatcagtcattattcttgatgggaacaatttttcatcaccagtgccgaaaacatttgccaattttaaaaacttgaccaccctcagtctt 242  Q
    |||||||||||| |||||||||||||  | ||||||||||||||| ||||||||  ||||||||||||||||||||||| | |||||||||| ||||    
5886020 agagaacctatcggtcattattcttggcgagaacaatttttcatccccagtgccacaaacatttgccaattttaaaaacctaaccaccctcaatctt 5886116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 62 - 273
Target Start/End: Complemental strand, 5565418 - 5565207
Alignment:
62 tttgttgccgttgcgtgacttgcaggaattgagcatgtcttactgtgatttatcaggaccccttgattcttccctaacaagactagagaacctatcagtc 161  Q
    |||||||||||| |||||| | || |||||  |||||||   ||||| | | |||||||||||||||||||||||  ||| |||||||||||||||||||    
5565418 tttgttgccgttccgtgacctacaagaattaggcatgtcaagctgtggtctttcaggaccccttgattcttccctttcaaaactagagaacctatcagtc 5565319  T
162 attattcttgatgggaacaatttttcatcaccagtgccgaaaacatttgccaattttaaaaacttgaccaccctcagtcttgcgctttgtgaattgaccg 261  Q
    |||||||||| ||  || ||||||||||| ||||||||  ||||||||||||||||||||||| ||||||||||||||||||    |||||  |||||||    
5565318 attattcttggtgacaataatttttcatccccagtgccacaaacatttgccaattttaaaaacctgaccaccctcagtcttgtagattgtgggttgaccg 5565219  T
262 gtacatttccac 273  Q
    ||||||||||||    
5565218 gtacatttccac 5565207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 53 - 242
Target Start/End: Original strand, 5894772 - 5894961
Alignment:
53 gagcaatgctttgttgccgttgcgtgacttgcaggaattgagcatgtcttactgtgatttatcaggaccccttgattcttccctaacaagactagagaac 152  Q
    ||||||||||||| | || ||||||||| | || ||||||||||||||| | |||||||| |||||| ||||||||||||||||| |||||||| |||||    
5894772 gagcaatgctttgatacctttgcgtgacctacaagaattgagcatgtctaattgtgatttgtcaggatcccttgattcttccctatcaagactacagaac 5894871  T
153 ctatcagtcattattcttgatgggaacaatttttcatcaccagtgccgaaaacatttgccaattttaaaaacttgaccaccctcagtctt 242  Q
    || ||||||||||||||| || | ||||||||||||||  || ||||  ||||||||||||||||||||||| | |||||||||| ||||    
5894872 ctgtcagtcattattctttatcgaaacaatttttcatcctcattgccagaaacatttgccaattttaaaaacctaaccaccctcaatctt 5894961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 62 - 242
Target Start/End: Complemental strand, 5605736 - 5605556
Alignment:
62 tttgttgccgttgcgtgacttgcaggaattgagcatgtcttactgtgatttatcaggaccccttgattcttccctaacaagactagagaacctatcagtc 161  Q
    |||||||||| | |||||| | || |||||  | |||||  |||||| ||| |||||||||||||||||||||||| ||||  |||||||| |||| |||    
5605736 tttgttgccgctccgtgacctacaagaattaggtatgtcagactgtggtttttcaggaccccttgattcttccctagcaaggttagagaacttatctgtc 5605637  T
162 attattcttgatgggaacaatttttcatcaccagtgccgaaaacatttgccaattttaaaaacttgaccaccctcagtctt 242  Q
    ||| ||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||| | |||||||||| ||||    
5605636 attcttcttgatgggaacaatttttcatccccagtgccagaaacatttgccaattttaaaaacctaaccaccctcaatctt 5605556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 47 - 273
Target Start/End: Complemental strand, 5553842 - 5553616
Alignment:
47 tgaattgagcaatgctttgttgccgttgcgtgacttgcaggaattgagcatgtcttactgtgatttatcaggaccccttgattcttccctaacaagacta 146  Q
    ||||| ||||||||||||||||||| || ||||  | || || |||||||||| | |||||||| || |||| || || |||||||||||| ||| ||||    
5553842 tgaatggagcaatgctttgttgccgctgtgtgaactacaagagttgagcatgtataactgtgatctagcagggccactagattcttccctatcaaaacta 5553743  T
147 gagaacctatcagtcattattcttgatgggaacaatttttcatcaccagtgccgaaaacatttgccaattttaaaaacttgaccaccctcagtcttgcgc 246  Q
     | |||||||| ||||||||||||||| ||||||||||||| || || || ||  ||||||||||||||||| ||||| |||||||||| |||||| |      
5553742 aaaaacctatcggtcattattcttgataggaacaatttttcttcccccgttccagaaacatttgccaattttcaaaacctgaccacccttagtcttacat 5553643  T
247 tttgtgaattgaccggtacatttccac 273  Q
     ||||| ||| || |||||||||||||    
5553642 cttgtggattaacaggtacatttccac 5553616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 48 - 301
Target Start/End: Original strand, 5852581 - 5852834
Alignment:
48 gaattgagcaatgctttgttgccgttgcgtgacttgcaggaattgagcatgtcttactgtgatttatcaggaccccttgattcttccctaacaagactag 147  Q
    |||| ||||||||||||||||||  |||||||  | ||    |||||| ||| | | |||||| || |||| || ||||||||||||||| ||| ||||     
5852581 gaatggagcaatgctttgttgccactgcgtgaactacaaatgttgagcttgtataaatgtgatctagcagggccacttgattcttccctatcaaaactaa 5852680  T
148 agaacctatcagtcattattcttgatgggaacaatttttcatcaccagtgccgaaaacatttgccaattttaaaaacttgaccaccctcagtcttgcgct 247  Q
     ||||||||||||||||||||||||| ||||||||||||| || || || ||  |||||||||| |||||| ||||| |||||||||| |||||| |       
5852681 ggaacctatcagtcattattcttgataggaacaatttttcttcccccgttccagaaacatttgctaattttcaaaacctgaccacccttagtctttcaga 5852780  T
248 ttgtgaattgaccggtacatttccacgtgcaatctttcagattggaacactgtc 301  Q
    ||||| |||||| |||||||||||||     |||||||||||||||||||||||    
5852781 ttgtggattgactggtacatttccacagaagatctttcagattggaacactgtc 5852834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 46 - 313
Target Start/End: Complemental strand, 5559643 - 5559376
Alignment:
46 atgaattgagcaatgctttgttgccgttgcgtgacttgcaggaattgagcatgtcttactgtgatttatcaggaccccttgattcttccctaacaagact 145  Q
    |||||| ||||||||||||||||||||||||||   |  | ||| ||| ||||||| ||||  ||||| |||||||||||||||| || ||  |||||||    
5559643 atgaatggagcaatgctttgttgccgttgcgtggtctagaagaactgaccatgtctaactgcaatttaacaggaccccttgattcatctctgtcaagact 5559544  T
146 agagaacctatcagtcattattcttgatgggaacaatttttcatcaccagtgccgaaaacatttgccaattttaaaaacttgaccaccctcagtcttgcg 245  Q
    | ||||  ||||  |||||||||||||||| ||||||||||| || || |||||  |||||||| ||||||| | ||| ||||| ||||| ||||||||     
5559543 aaagaatttatcgatcattattcttgatggaaacaatttttcttccccggtgcctgaaacattttccaatttcagaaatttgacaacccttagtcttgca 5559444  T
246 ctttgtgaattgaccggtacatttccacgtgcaatctttcagattggaacactgtcaactattgactt 313  Q
      ||||  |||||| | ||||||||||| |   ||||| || ||||||||| |||||  |||||||||    
5559443 gcttgtagattgactgatacatttccacataagatcttccaaattggaacattgtcatttattgactt 5559376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 46 - 243
Target Start/End: Original strand, 5538833 - 5539030
Alignment:
46 atgaattgagcaatgctttgttgccgttgcgtgacttgcaggaattgagcatgtcttactgtgatttatcaggaccccttgattcttccctaacaagact 145  Q
    |||||| ||||||||||||||||||||| | ||   |  | ||| ||| ||||||| ||||| ||||| ||||||| ||||| || || ||  |||||||    
5538833 atgaatggagcaatgctttgttgccgttacatggtctagaagaactgaccatgtctaactgtaatttaacaggacctcttgaatcatctctgtcaagact 5538932  T
146 agagaacctatcagtcattattcttgatgggaacaatttttcatcaccagtgccgaaaacatttgccaattttaaaaacttgaccaccctcagtcttg 243  Q
    |||||| |||||  |||||||||| ||||| ||||||||||| || ||||||||  |||||||| ||||||| | ||| ||||| ||||| |||||||    
5538933 agagaatctatcgatcattattctcgatggaaacaatttttcttccccagtgcctgaaacattttccaatttcagaaatttgactacccttagtcttg 5539030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 159
Target Start/End: Complemental strand, 5613740 - 5613627
Alignment:
46 atgaattgagcaatgctttgttgccgttgcgtgacttgcaggaattgagcatgtcttactgtgatttatcaggaccccttgattcttccctaacaagact 145  Q
    |||||| || ||||||||||||||| ||| | ||| | || ||| ||||||||||| ||||| || |||||||||| ||||||||||||||  ||| |||    
5613740 atgaatggatcaatgctttgttgcctttgagcgacctacaagaactgagcatgtctaactgtaatctatcaggacctcttgattcttccctttcaaaact 5613641  T
146 agagaacctatcag 159  Q
    ||||||||||||||    
5613640 agagaacctatcag 5613627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 251993 - 252057
Alignment:
46 atgaattgagcaatgctttgttgccgttgcgtgacttgcaggaattgagcatgtcttactgtgat 110  Q
    |||||| | ||||||||||||||||| || ||||  |||| || |||||||||||| ||||||||    
251993 atgaatggggcaatgctttgttgccgctgtgtgatctgcaagagttgagcatgtctaactgtgat 252057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 231
Target Start/End: Complemental strand, 1485888 - 1485703
Alignment:
46 atgaattgagcaatgctttgttgccgttgcgtgacttgcaggaattgagcatgtcttactgtgatttatcaggaccccttgattcttccctaacaagact 145  Q
    |||||| ||||||||| ||||||||| |||||||  |||| |  |||||||||    | |||  | ||||||||||| ||||||| |||||  ||| |||    
1485888 atgaatggagcaatgccttgttgccgctgcgtgagctgcaagtgttgagcatgagcaattgtagtctatcaggacccgttgattcctccctttcaaaact 1485789  T
146 agagaacctatcagtcattattcttgatgggaacaatttttcatcaccagtgccgaaaacatttgccaattttaaaaacttgacca 231  Q
    |||||||||| |  ||||||||||||||  ||||||| ||||||| ||| | ||  |||||||| |||||||||||||| ||||||    
1485788 agagaacctaaccatcattattcttgataagaacaatctttcatcgccaattccagaaacatttaccaattttaaaaacctgacca 1485703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0454 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0454
Description:

Target: scaffold0454; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 231
Target Start/End: Complemental strand, 1070 - 884
Alignment:
46 atgaattgagcaatgctttgttgccgttgcgtgacttgcaggaattgagcatgtcttactgtgatttatcaggaccccttgattcttccctaacaagact 145  Q
    |||||| ||||||||| ||||||||| |||||||  |||| |  |||||||||    | |||  | ||||||||||| ||||||| |||||  ||| |||    
1070 atgaatggagcaatgccttgttgccgctgcgtgagctgcaagtgttgagcatgagcaattgtagtctatcaggacccgttgattcctccctttcaaaact 971  T
146 agagaacctatcagtcattattcttgatgggaacaatttttcatcaccagtgccgaaaacatttgcc-aattttaaaaacttgacca 231  Q
    |||||||||| |  ||||||||||||||  ||||||| ||||||| ||| | ||  |||||||| || |||||||||||| ||||||    
970 agagaacctaaccatcattattcttgataagaacaatctttcatcgccaattccagaaacatttacctaattttaaaaacctgacca 884  T

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