View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1323_low_20 (Length: 335)
Name: NF1323_low_20
Description: NF1323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1323_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 9 - 242
Target Start/End: Complemental strand, 34792587 - 34792353
Alignment:
| Q |
9 |
agcataggaggaggtaaggagaattgtaggg-aataaatcaaaaatagaggacggtgatgtcaatcaaatggagtacatgaaatgtgtcatcaaagaaac |
107 |
Q |
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| T |
34792587 |
agcacaggaggaggtaaggagaattgtaggggaataaataaaaaatagaggacagtgatgtcaatcaaatggagtacatgaaatgtgtcatcagagaaac |
34792488 |
T |
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| Q |
108 |
tttgaggatgcatcctgctggtcctcttttggctcctagagaaacaacatctagtgttaaactcggagggtatggtattcctgataaaacaacggtatat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34792487 |
tttgaggatgcatcctgctggtcctcttttggctcctagagaaacaacatctagtgttaaactcggagggtatggtattcctgataaaacaacggtatat |
34792388 |
T |
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| Q |
208 |
atcaacgcatgggtaatccagagggaccctgaatt |
242 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
34792387 |
atcaacgcatgggtaatccagagggaccctgaatt |
34792353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 9 - 242
Target Start/End: Original strand, 34417566 - 34417799
Alignment:
| Q |
9 |
agcataggaggaggtaaggagaattgtagggaataaatcaaaaatagaggacggtgatgtcaatcaaatggagtacatgaaatgtgtcatcaaagaaact |
108 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| || ||||||||| |
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| T |
34417566 |
agcacaggaggaggtaaggagaattgtagggaataaatcaaaaatagaggatagtgatgtcaatcaaatggagtacatgatatgtgtaattaaagaaact |
34417665 |
T |
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| Q |
109 |
ttgaggatgcatcctgctggtcctcttttggctcctagagaaacaacatctagtgttaaactcggagggtatggtattcctgataaaacaacggtatata |
208 |
Q |
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|||||||||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||| |
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| T |
34417666 |
ttgaggatgcatccagctgctcctcttttggctcctagaaaaacaacatctagtgttaaactcggtgggtatgatattcctgataaaacaatggtatatg |
34417765 |
T |
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| Q |
209 |
tcaacgcatgggtaatccagagggaccctgaatt |
242 |
Q |
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||||| |||||| |||||| |||||||||||||| |
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| T |
34417766 |
tcaacacatgggcaatccatagggaccctgaatt |
34417799 |
T |
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