View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1323_low_21 (Length: 329)

Name: NF1323_low_21
Description: NF1323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1323_low_21
NF1323_low_21
[»] chr1 (1 HSPs)
chr1 (29-319)||(22091350-22091642)


Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 29 - 319
Target Start/End: Complemental strand, 22091642 - 22091350
Alignment:
Q  29 aaaagcccaaacataaatgcaaagatttttgaaacgttgaatttgagttatctatatttttgcgtagnnnnnnnngctgaattagttgctatcggctaca 128  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||        ||||||||| |||||||||||||||    
T  22091642 aaaagcccaaacataaatgcaatgatttttgaaacgttgaatttgagttatctatatttttgcgtagttttttttgctgaattacttgctatcggctaca 22091543  T
Q  129 ttgttgttcgataggaacattacattgctactcctggtgtggcttgtataatttgaacttcaaaatccaccagagacattaatatgcat-tagtcaatga 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||    
T  22091542 ttgttgttcgataggaacattacattgctactcctggtgtggcttgtataatttgaacttcgaaatccaccagagacattaatatgcatgtagtcaatga 22091443  T
Q  228 tcttaggttaggtatcagatgggg-ttagccttcttataggttgaggcgctgccacttcatcgaagtttagctgatcctgctgccacttcatc 319  Q
    ||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22091442 tcttaggttagatatcagatggggtttagccctcttataggttgaggcgctgccacttcatcgaagtttagctgatcctgctgccacttcatc 22091350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University