View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1323_low_3 (Length: 606)
Name: NF1323_low_3
Description: NF1323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1323_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 457; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 457; E-Value: 0
Query Start/End: Original strand, 30 - 598
Target Start/End: Original strand, 3965394 - 3965962
Alignment:
| Q |
30 |
aatatgatagagctggatttacaatacacacaaatcaatgcattgcctgcatcgtttggacgtcaaaccaagcttgaaatcctacatttaggaaactgtt |
129 |
Q |
| |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3965394 |
aatatgatagagttggatttacaatacacacaaatcaatgcattgcctgcatcatttggacgtcaaaccaagcttgaaatcctacatttaggaaactgtt |
3965493 |
T |
|
| Q |
130 |
ccattgaaagttttccttcatgttttaagaatttgataagactacaatatctagacataagatattgccttgagctgcaaactctaccagagcttcctca |
229 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3965494 |
ccattgaaagatttccttcatgttttaagaatttgataagactgcaatatctagacataagatattgccttaagctgcaaactctaccagagcttcctca |
3965593 |
T |
|
| Q |
230 |
atctcttgaagttctacacgcgcgagggtgcacatcactagagactgtgttgttcccttcaattcctgaacaattcaaggagaacaggaatagggttgta |
329 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
3965594 |
atctcttgaagttctacacgcgcgaggatgcacatcactagagagtgtgttgttcccttcaattcctgaacaattcaaggagaacaggtatagggttgta |
3965693 |
T |
|
| Q |
330 |
ttcgcgaattgcttgaaattggatgaacattcacttacaaatattgtgctcaatgcacaaataaacattatgaaattcgcataccaacatgtatcagctt |
429 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||| ||||||||| | | ||||| |||||||||| ||||||||| |||| ||||||||||||||||| |
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| T |
3965694 |
ttcgcgaattgcttgaaattggatgaacattctcttgcaaatattgcgtttaatgcgcaaataaacaatatgaaatttgcatgccaacatgtatcagctt |
3965793 |
T |
|
| Q |
430 |
cagaccatgattttcataataagttcaatgattataaggatcacaatgattcttatcaagcactttacgtgtatccaggaaacagtgttccaaagtggtt |
529 |
Q |
| |
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| T |
3965794 |
tggaacatgattttcataataagttcaatgattataaggatcacaatgattcttatcaagcaatttacgtgtatccaggaaacagcgttccagagtggtt |
3965893 |
T |
|
| Q |
530 |
tgagtatatgacaacaatagattatgtagtcattgatttatcttcttctacatcgcgttcccctttgct |
598 |
Q |
| |
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||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
3965894 |
tgagtatatgacaacaacggattatgtagtcattgatctatcttcttctacatcaagttcccctttgct |
3965962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 30 - 591
Target Start/End: Complemental strand, 4016919 - 4016361
Alignment:
| Q |
30 |
aatatgatagagctggatttacaatacacacaaatcaatgcattgcctgcatcgtttggacgtcaaaccaagcttgaaatcctacatttaggaaactgtt |
129 |
Q |
| |
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||||||| |||||||||||||| |||||| ||| | ||| ||||||||||||| |||||| |||||| ||||||||||||||||||||||||||| |||| |
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|
| T |
4016919 |
aatatgacagagctggatttacgatacactcaagtgaatacattgcctgcatcatttggatgtcaaagcaagcttgaaatcctacatttaggaaattgtt |
4016820 |
T |
|
| Q |
130 |
ccattgaaagttttccttcatgttttaagaatttgataagactacaatatctagacataagatattgccttgagctgcaaactctaccagagcttcctca |
229 |
Q |
| |
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||||||||| |||||||||||||||||||||| | |||| ||||||||||||||| |||||||||| | | ||||||| |||||||| |||||||| |
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| T |
4016819 |
ccattgaaaattttccttcatgttttaagaatctaataaaactacaatatctagaggtaagatattgtcagaaactgcaaaatctaccagtgcttcctcc |
4016720 |
T |
|
| Q |
230 |
atctcttgaagttctacacgcgcgagggtgcacatcactagagactgtgttgttcccttcaattcctgaacaattcaaggagaacaggaatagggttgta |
329 |
Q |
| |
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|||||||||| |||||| ||||| || ||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |
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| T |
4016719 |
atctcttgaaattctactcgcgcaagagtgcacagcactgaagactgtgttgttcccttcaattgctgaacaattcaaggagaacaggaaaagggttgtg |
4016620 |
T |
|
| Q |
330 |
ttcgcgaattgcttgaaattggatgaacattcacttacaaatattgtgctcaatgcacaaataaacattatgaaattcgcataccaacatgtatcagctt |
429 |
Q |
| |
|
|| |||||||||||||||||||| || |||||||| ||||||||||| | ||||| ||||||||||||| ||||| |||||||||||||||||||||| |
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|
| T |
4016619 |
tttgcgaattgcttgaaattggacgagcattcactcgcaaatattgtgtttaatgctcaaataaacattaccaaatttgcataccaacatgtatcagctt |
4016520 |
T |
|
| Q |
430 |
c-agaccatgattttcataataagttcaatgattataaggatcacaatgattcttatcaagcactttacgtgtatccaggaaacagtgttccaaagtggt |
528 |
Q |
| |
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| ||| |||| ||||| ||||||||||| ||||||| | | |||||||| ||||||||||||| ||||||||||| | | |||||||| | |||| |
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|
| T |
4016519 |
ctaga-gatgaatttcacaataagttcaacaattataacg---aagatgattctcatcaagcactttatgtgtatccagggagctgtgttccagattggt |
4016424 |
T |
|
| Q |
529 |
ttgagtatatgacaacaatagattatgtagtcattgatttatcttcttctacatcgcgttccc |
591 |
Q |
| |
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|||| |||| |||||||| |||||||||| ||||||| || ||||||||||||||| ||||| |
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|
| T |
4016423 |
ttgaatataagacaacaacggattatgtagccattgatctaccttcttctacatcgcattccc |
4016361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 42 - 598
Target Start/End: Original strand, 3948404 - 3948947
Alignment:
| Q |
42 |
ctggatttacaatacacacaaatcaatgcattgcctgcatcgtttggacgtcaaaccaagcttgaaatcctacatttaggaaactgttccattgaaagtt |
141 |
Q |
| |
|
|||||||||| |||||||||| | |||| | ||||||||| ||||||| |||||| |||||||||| ||||||||||||| |||||| ||| |||| || |
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|
| T |
3948404 |
ctggatttacgatacacacaagttaatgtaatgcctgcattgtttggatgtcaaagaaagcttgaaaccctacatttaggatactgtttcat-gaaaatt |
3948502 |
T |
|
| Q |
142 |
ttccttcatgttttaagaatttgata--agactacaatatctagacataagatattgccttgagctgcaaactctaccagagcttcctcaatctcttgaa |
239 |
Q |
| |
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|||||| ||||||||||||| ||||| || ||||||||||||| |||||||| ||||| | | ||||||| ||| ||||| || ||||||||||||||| |
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|
| T |
3948503 |
ttcctttatgttttaagaatatgatataaggctacaatatctagccataagatgttgccataaactgcaaagtctgccagacctacctcaatctcttgaa |
3948602 |
T |
|
| Q |
240 |
gttctacacgcgcgagggtgcacatcactagagactgtgttgttcccttcaattcctgaacaattcaaggagaacaggaatagggttgtattcgcgaatt |
339 |
Q |
| |
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|||||| | || ||| ||| | | |||||||||||||||| ||||||||| ||||||||||| ||| |||||||| || ||||||| |
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|
| T |
3948603 |
attctacttg--------tgaaca-----agaaaagg-gttgttcccttcaatttctgaacaatgcaaggagaacatgaaaagggttgtgtttgcgaatt |
3948688 |
T |
|
| Q |
340 |
gcttgaaattggatgaacattcacttacaaatattgtgctcaatgcacaaataaacattatgaaattcgcataccaacatgtatcagcttcagaccatga |
439 |
Q |
| |
|
|||||||||||||||||||||| || | ||||||||| | ||| |||||||||||| ||||||| |||||||||||| ||||||||||||| || || |
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|
| T |
3948689 |
gcttgaaattggatgaacattctctcgcgaatattgtgtttaatttgcaaataaacattctgaaatttgcataccaacatttatcagcttcagaacagga |
3948788 |
T |
|
| Q |
440 |
ttttcataataagttcaatgattataaggatcacaatgattcttatcaagcactttacgtgtatccaggaaacagtgttccaaagtggtttgagtatatg |
539 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||| ||| ||||||||||| |||| ||||||||||| | |||||||||||||||||| | ||||| | |
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|
| T |
3948789 |
ttttcataataagttcaatgattataacgttcacattgaatcttatcaagctatttatgtgtatccagggagcagtgttccaaagtggttcgtgtataag |
3948888 |
T |
|
| Q |
540 |
acaacaatagattatgtagtcattgatttatcttcttctacatcgcgttcccctttgct |
598 |
Q |
| |
|
||||||| |||| ||||||||| ||| |||||||||||||| |||||||||||||||| |
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|
| T |
3948889 |
acaacaacggattttgtagtcatggatctatcttcttctacaccgcgttcccctttgct |
3948947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 53 - 425
Target Start/End: Complemental strand, 3804545 - 3804171
Alignment:
| Q |
53 |
atacacacaaatcaatgcattgcctgcatcgtttggacgtcaaaccaagcttgaaatcctacatttaggaaactgttccattgaaagttttccttcatgt |
152 |
Q |
| |
|
|||||||| | |||||| |||||||||| ||||||| |||||| || ||| ||||||||||||||||| | |||| ||| |||| ||||||||||||| |
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|
| T |
3804545 |
atacacactagtcaatgttttgcctgcattgtttggatgtcaaagaaaacttaaaatcctacatttaggataatgtttcat-gaaaattttccttcatgt |
3804447 |
T |
|
| Q |
153 |
tttaagaatttgataagactacaatatctagacataagatattgccttgagctgcaaactctaccagagcttcctcaatctcttgaagttctac--ac-- |
248 |
Q |
| |
|
|| |||||| ||||||||||||| ||||||||||| ||| ||||| | | ||| ||||||| ||||||||||||||||||||||| || ||| || |
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|
| T |
3804446 |
tt-aagaatctgataagactacagtatctagacatttgatgttgccataaactgaaaactctgtcagagcttcctcaatctcttgaaattatacttactt |
3804348 |
T |
|
| Q |
249 |
gcgcgagggtgcacatcactagagactgtgttgttcccttcaattcctgaacaattcaaggagaacaggaatagggttgtattcgcgaattgcttgaaat |
348 |
Q |
| |
|
|||| ||||||||||| |||||| |||| |||||||||||||||| ||||||||| ||||||||||| ||| |||||||| || ||||||||||| |||| |
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|
| T |
3804347 |
gcgcaagggtgcacattactagaaactgggttgttcccttcaatttctgaacaatgcaaggagaacatgaaaagggttgtgtttgcgaattgcttaaaat |
3804248 |
T |
|
| Q |
349 |
tggatgaacattcacttacaaatattgtgctcaatgcacaaataaacattatgaaattcgcataccaacatgtatca |
425 |
Q |
| |
|
|||||||| | || | | |||| ||| | ||||| |||| ||||||| ||||||| |||||||||||||||||| |
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|
| T |
3804247 |
tggatgaataatctccctcgaatactgtatttaatgcgcaaagaaacattctgaaatttgcataccaacatgtatca |
3804171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 263 - 375
Target Start/End: Original strand, 3921822 - 3921937
Alignment:
| Q |
263 |
atcactagagactgtgttgttcccttcaa---ttcctgaacaattcaaggagaacaggaatagggttgtattcgcgaattgcttgaaattggatgaacat |
359 |
Q |
| |
|
||||||| ||||||| ||||||||||||| || |||||||||||||||| |||| ||| ||||||| ||| ||||||||| || |||||||||| | |
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| T |
3921822 |
atcactaaagactgtattgttcccttcaacagttgctgaacaattcaaggaaaacaagaaaagggttgagttctggaattgcttcaacttggatgaactt |
3921921 |
T |
|
| Q |
360 |
tcacttacaaatattg |
375 |
Q |
| |
|
|| || | |||||||| |
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|
| T |
3921922 |
tctctgataaatattg |
3921937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 476 - 547
Target Start/End: Original strand, 3922041 - 3922112
Alignment:
| Q |
476 |
tgattcttatcaagcactttacgtgtatccaggaaacagtgttccaaagtggtttgagtatatgacaacaat |
547 |
Q |
| |
|
|||||||||||||||| | || |||||||| |||| ||||||||||||||||| ||||| | ||||||||| |
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|
| T |
3922041 |
tgattcttatcaagcagtgtatgtgtatcctggaagtagtgttccaaagtggttggagtacaagacaacaat |
3922112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 271 - 375
Target Start/End: Complemental strand, 4023404 - 4023297
Alignment:
| Q |
271 |
agactgtgttgttcccttcaa---ttcctgaacaattcaaggagaacaggaatagggttgtattcgcgaattgcttgaaattggatgaacattcacttac |
367 |
Q |
| |
|
||||||| ||||||||||||| || |||||||||||||||| |||| ||| ||| ||| ||| |||||||| ||| |||||||||||||| || | |
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| T |
4023404 |
agactgtattgttcccttcaacagtttctgaacaattcaaggaaaacaagaaaaggattgagttctggaattgctggaacttggatgaacattctctcat |
4023305 |
T |
|
| Q |
368 |
aaatattg |
375 |
Q |
| |
|
|||||||| |
|
|
| T |
4023304 |
aaatattg |
4023297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 361
Target Start/End: Complemental strand, 4000488 - 4000395
Alignment:
| Q |
271 |
agactgtgttgttcccttcaa---ttcctgaacaattcaaggagaacaggaatagggttgtattcgcgaattgcttgaaattggatgaacattc |
361 |
Q |
| |
|
||||||| ||||||||||||| || |||||||||||||||| |||| ||| ||| ||| ||| ||||||||| || |||||||||||||| |
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|
| T |
4000488 |
agactgtattgttcccttcaacaatttctgaacaattcaaggaaaacaagaaaaggattgagttctggaattgcttcaacttggatgaacattc |
4000395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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