View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1323_low_30 (Length: 273)
Name: NF1323_low_30
Description: NF1323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1323_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 31 - 234
Target Start/End: Original strand, 34005432 - 34005635
Alignment:
| Q |
31 |
caccacagaacaaagaacagaagttagaaaatgccaacttccaaaaggaccaataatttccaacaaacacagaatttcctgaaacgttatttcttcagat |
130 |
Q |
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| T |
34005432 |
caccacagaacaaagaacagaagttagaaaatgccaacttccaaaaggaccaataatttccaacaaacacagaatttcctgaaacgttatttcttcagat |
34005531 |
T |
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| Q |
131 |
catctttcttcttgattgaccatgtttaaatgaagcaaagaacaaaccaactcaagctcattggatttacttccatataccctgaacaagttatattgat |
230 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34005532 |
catctttcttcttgattgaccatgtttaaatgaagcaaagaacaaaccaactcaagctcattggatttacttccatataccctgaacaagttatagtgat |
34005631 |
T |
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| Q |
231 |
ctgt |
234 |
Q |
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|||| |
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| T |
34005632 |
ctgt |
34005635 |
T |
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