View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1323_low_32 (Length: 253)
Name: NF1323_low_32
Description: NF1323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1323_low_32 |
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Alignment Details
Target: chr6 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 5302983 - 5303178
Alignment:
| Q |
1 |
atttggacttagatgatttggtttggacatgtgaagcaattagatggtggctgaataaagaaaaatgatgagatgtatgtaagtcaaatatattaattac |
100 |
Q |
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| T |
5302983 |
atttggacttagatgatttggtttggacatgtgaagcaattagatggtggctgaataaagaaaaatgatgagatgtatgtaagtcaaatat----attac |
5303078 |
T |
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| Q |
101 |
cagcaaccaaaaagagaagaaaaca-ttaagacatcaatttagcaataagaaaattacttcatcagagtcatcctcgacaaatatcgatgaatacaacat |
199 |
Q |
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| T |
5303079 |
cagcaaccaaaaagagaagaaaacatttaagacatcaatttagcaataagaaaattacttcatcagagtcatcctcgacaaatatcgatcaatacaacat |
5303178 |
T |
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Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 54728592 - 54728785
Alignment:
| Q |
1 |
atttggacttagatgatttggtttggacatgtgaagcaattagatggtggctgaataaagaaaaatgatgagatgtatgtaagtcaaatatattaattac |
100 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54728592 |
atttgaacttagatgatttggtttggacatgtgaagcaattagatggtggctgaataaagaaaaatgatgagatgtatgtaagtcaaatatatta----- |
54728686 |
T |
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| Q |
101 |
cagcaaccaaaaagagaagaaaacattaagacatcaatttagcaataagaaaattacttcatcagagtcatcctcgacaaatatcgatgaatacaacat |
199 |
Q |
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| T |
54728687 |
cagcaaccaaaaagagaagaaaacattaagacatcaatttagcaataagaaaattacttcatcagagtcatcctcgacaaatatagatcaatacaacat |
54728785 |
T |
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