View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1323_low_35 (Length: 251)
Name: NF1323_low_35
Description: NF1323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1323_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 30239999 - 30240240
Alignment:
| Q |
1 |
attcatgtcataattgatagcacaaatagcactaatgcaactgttaatgtttgtaacacaaataaaggtgtcccaattggtgatccatttgcaaatgttg |
100 |
Q |
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| T |
30239999 |
attcatgtcataattgatagcacaaataacactaatgcaactgttaatgtttgtaacacaaatgaaggtgtcccaattggtgatccatttgcaaatgttg |
30240098 |
T |
|
| Q |
101 |
agaccatagtcacatatgtgaagaattcggtacgtatggggtatagagattcagtacgcgtttgttcgcagtactaatgctaaaaagaaacaagtccaac |
200 |
Q |
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| T |
30240099 |
agaccatagtcacatatgtgaagaattcggtacgtatggggtatagagcttcagtacgcgtctgttcgcagtactaatgctaaaaagaaacaagtccaac |
30240198 |
T |
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| Q |
201 |
actatatgataaaataagccacttcatgcaaaaaagaataat |
242 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||| |
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| T |
30240199 |
actatatgatgaaataagccacttcatgcaaaaaagaataat |
30240240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 116 - 145
Target Start/End: Complemental strand, 45982998 - 45982969
Alignment:
| Q |
116 |
atgtgaagaattcggtacgtatggggtata |
145 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
45982998 |
atgtgaagaattcggtacgtatggggtata |
45982969 |
T |
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