View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1323_low_40 (Length: 214)
Name: NF1323_low_40
Description: NF1323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1323_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 177; Significance: 1e-95; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 54636844 - 54637024
Alignment:
| Q |
1 |
atgatgatatggagcatgaaatgatgatgttccgagttatgttcaacacagcttttgttagatccaatattctgatgcttaatcgcgatgaaattgatgt |
100 |
Q |
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| T |
54636844 |
atgatgatatggagcatgaaatgatgatgttccgagttatgttcaacacagcttttgttagatccaatattctgatgcttaatcgcgatgaaattgatgt |
54636943 |
T |
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| Q |
101 |
tctatgggatgctaaagatcactttccaaaagatttcagagctgaggtagatttttgatttcatctataatcacacaggtt |
181 |
Q |
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| T |
54636944 |
tctatgggatgctaaagatcactttccaaaagatttcagagctgaggtagatttttgatttcatctataatcacacgggtt |
54637024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 141
Target Start/End: Original strand, 3236594 - 3236711
Alignment:
| Q |
24 |
atgatgttccgagttatgttcaacacagcttttgttagatccaatattctgatgcttaatcgcgatgaaattgatgttctatgggatgctaaagatcact |
123 |
Q |
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| T |
3236594 |
atgatgttccgggtgatgtttaatacagcattcataagatcaaatattttgatgcttaaccgcgatgaaatcgacatattatggaatactaaagatcact |
3236693 |
T |
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| Q |
124 |
ttccaaaagatttcagag |
141 |
Q |
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| T |
3236694 |
tccctaaaaatttcagag |
3236711 |
T |
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