View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1323_low_7 (Length: 503)
Name: NF1323_low_7
Description: NF1323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1323_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 98 - 492
Target Start/End: Original strand, 26430961 - 26431355
Alignment:
| Q |
98 |
caaatgaagtaaacataagaaatgagaataatttcttggtaaactattagtggtgacttgaacttgcagtaggtgcattataagtaacatggtagtggtg |
197 |
Q |
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| T |
26430961 |
caaatgaagtaaacataagaaatgagaataatttcttggtaaactattagtggtgacttgaacttgcagtaggtgcattataagtaacatggtagtggtg |
26431060 |
T |
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| Q |
198 |
gaagtacctgatgaccactctgagtcaagatgtcaggtagaggttttgcaggttttggttgaggagtactcttttgcttcttctttccaaaattttgaac |
297 |
Q |
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| T |
26431061 |
gaagtacctgatgaccactctgagtcaagatgtcaggtagaggttttgcaggttttggttgaggagtactcttttgcttcttctttccaaaattttgaac |
26431160 |
T |
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| Q |
298 |
agagctagcccttaatatgtcatttgttctagtccttcttataggaattgttccttcagaacacataccatttttctgccaaagctgagttataggcttt |
397 |
Q |
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| T |
26431161 |
agagctagcccttaatatgtcatttgttctagtccttcttataggaattgttccttcagaacacataccatttttctgccaaagctgagttataggcttt |
26431260 |
T |
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| Q |
398 |
gaatttgaatttgaatttgaagagactttgctctctccaaaagttttcctttctggatggaaatttggcctcatctgcatcacaaaccaattcat |
492 |
Q |
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| T |
26431261 |
gaatttgaatttgaatttgaagagactttgctctctccaaaagttttcctttctggatgaaaatttggcctcatctgcatcacaaaccaattcat |
26431355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 406
Target Start/End: Original strand, 54748379 - 54748443
Alignment:
| Q |
342 |
gaattgttccttcagaacacataccatttttctgccaaagctgagttataggctttgaatttgaa |
406 |
Q |
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| T |
54748379 |
gaattgtttcttcagaacacatcccaattttgtgccaaacctgagtcaaaggctttcaatttgaa |
54748443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 406
Target Start/End: Original strand, 54765106 - 54765170
Alignment:
| Q |
342 |
gaattgttccttcagaacacataccatttttctgccaaagctgagttataggctttgaatttgaa |
406 |
Q |
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|||||||| ||||||||||||| ||| |||| ||||||| |||||| | ||||||| |||||||| |
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| T |
54765106 |
gaattgtttcttcagaacacatcccaattttgtgccaaacctgagtcaaaggctttcaatttgaa |
54765170 |
T |
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