View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1323_low_8 (Length: 484)
Name: NF1323_low_8
Description: NF1323
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1323_low_8 |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0061 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 28 - 484
Target Start/End: Original strand, 27273160 - 27273617
Alignment:
| Q |
28 |
caattgtaaaatagaaagagagtgaaactgccataaatcaccctgttaaagcatactcatgtgannnnnnnnncaaaagaagattcatgaggttaacaaa |
127 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
27273160 |
caattgtaaaatagaaagagagtgaaactgccataaatcaccctgttaaagcatactcatgtgatttttttt-caaaagaagattcatgaggttaacaaa |
27273258 |
T |
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| Q |
128 |
ataagatnnnnnnnntgtgcattaatgaatactacaattgaacagtttgaattgaaaaggacatttagatgaaaaatccaatctaaatttaggaaattta |
227 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
27273259 |
ataagataaaaaaaa-gtgcattaatgaatactacaattgaacagtttgaattgaaaaggacatttagatgaaaaatccaatctaaattcaggaaattta |
27273357 |
T |
|
| Q |
228 |
aaatagtctcatagtagaagaagaaagcaaagaaaaagagttacatcggtatatcattatagagttcgacgccatgttgttaactgaaactaaaatacaa |
327 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||| |
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| T |
27273358 |
aaatagtctcatagtagaagaagaaagcaaagaaaaagaattacatcggtatatcattatagagtgcgacgtcatgttgttaactaaaactaaaatacaa |
27273457 |
T |
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| Q |
328 |
agaactctacttc---gtcgatagttattcgttgtagttgttgggagcaagcatacgttacacatttgaaaattgcaagaatcaaattaaatctagtcaa |
424 |
Q |
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||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
27273458 |
agaactctacttcgatgttgatagttattcgttgtagttgttgggagcaagcatacgttacacatttgagaattgcaataatcaaattaaatctagtcaa |
27273557 |
T |
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| Q |
425 |
aacaccttgaattcaaatcctaattctctcaaagccatgttatgctctgcttgttatgtc |
484 |
Q |
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| T |
27273558 |
aacaccttgaattcaaatcctaattctctcaaagccatgttatgctctacttgttatgtc |
27273617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 182; Significance: 3e-98; HSPs: 2)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 256 - 484
Target Start/End: Original strand, 290 - 521
Alignment:
| Q |
256 |
aaagaaaaagagttacatcggtatatcattatagagttcgacgccatgttgttaactgaaactaaaatacaaagaactctacttcg---tcgatagttat |
352 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| | || |||||||| |
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| T |
290 |
aaagaaaaagagttacatcggtatatcattatagagtgcgacgtcatgttgttaactgaaactaaaatacaaagaactctacttggatgtcaatagttat |
389 |
T |
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| Q |
353 |
tcgttgtagttgttgggagcaagcatacgttacacatttgaaaattgcaagaatcaaattaaatctagtcaaaacaccttgaattcaaatcctaattctc |
452 |
Q |
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| T |
390 |
tcgttgtagttgttgggagcaagcatacgtttcacatttgaaaattgcaataatcaaattaaatctagtcaaaacaccttatattcaaatcctaattctc |
489 |
T |
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| Q |
453 |
tcaaagccatgttatgctctgcttgttatgtc |
484 |
Q |
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| T |
490 |
tcaaagccatgttatgctctacttgttatgtc |
521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 256 - 484
Target Start/End: Original strand, 5801 - 6032
Alignment:
| Q |
256 |
aaagaaaaagagttacatcggtatatcattatagagttcgacgccatgttgttaactgaaactaaaatacaaagaactctacttcg---tcgatagttat |
352 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| | || |||||||| |
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| T |
5801 |
aaagaaaaagagttacatcggtatatcattatagagtgcgacgtcatgttgttaactgaaactaaaatacaaagaactctacttggatgtcaatagttat |
5900 |
T |
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| Q |
353 |
tcgttgtagttgttgggagcaagcatacgttacacatttgaaaattgcaagaatcaaattaaatctagtcaaaacaccttgaattcaaatcctaattctc |
452 |
Q |
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| T |
5901 |
tcgttgtagttgttgggagcaagcatacgtttcacatttgaaaattgcaataatcaaattaaatctagtcaaaacaccttatattcaaatcctaattctc |
6000 |
T |
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| Q |
453 |
tcaaagccatgttatgctctgcttgttatgtc |
484 |
Q |
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| T |
6001 |
tcaaagccatgttatgctctacttgttatgtc |
6032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 138; Significance: 6e-72; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 44 - 472
Target Start/End: Original strand, 13550435 - 13550860
Alignment:
| Q |
44 |
agagagtgaaactgccataaatcaccctgttaaagcatactcatgtgannnnnnnnncaaaagaagattcatgaggttaacaaaataagatnnnnnnnnt |
143 |
Q |
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| T |
13550435 |
agagagagaaactgtcataaatcaccctgttaaaacatactcatgtgatttttttg--aaaagaagattcatgaagttaataaaataagataaaaa---- |
13550528 |
T |
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| Q |
144 |
gtgcattaatgaatactacaattgaacagtttgaattgaaaagg-acatttagatgaaaaa-tccaatctaaatttaggaaatttaaaatagtctcatag |
241 |
Q |
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| T |
13550529 |
gtgcattaatggatactgcacctg-----tttgaattgaaaagggacatttagataaaaaaatcaaatctaaattttggaaatttaaaatagtctcatag |
13550623 |
T |
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| Q |
242 |
tagaagaagaaagcaaagaaaaagagttacatcggtatatc--attatagagttcgacgccatgttgttaactgaaactaaaatacaaagaactctactt |
339 |
Q |
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| T |
13550624 |
tagaagaagaaagcaaagaaaaagagttacataggtatatctaaatttaaaatt-gtctc-atgttgttaactgaaactaaaatacgaagaactccgctt |
13550721 |
T |
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| Q |
340 |
c---gtcgatagttattcgttgtagttgttgggagcaa-gcatacgttacacatttgaaaattgcaagaatcaaattaaatctagtcaaaacaccttgaa |
435 |
Q |
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| T |
13550722 |
caatgtcaatcgttattc-ttgtagttgttgggagcaaagcatctgttacacatttgaaaattgcaataatcaaattaaatcatgtaaaaacaccttcaa |
13550820 |
T |
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| Q |
436 |
ttcaaatcctaattctctcaaagc---catgttatgctct |
472 |
Q |
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| T |
13550821 |
ttcagatcctaattctctcaaagcatgcatgttatgctct |
13550860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 2e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 101 - 277
Target Start/End: Original strand, 24867920 - 24868092
Alignment:
| Q |
101 |
caaaagaagattcatgaggttaacaaaataagatnnnnnnnntgtgcattaatgaatactacaattgaacagtttgaattgaaaaggacatttagatgaa |
200 |
Q |
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| T |
24867920 |
caaaagaagattcatgaagttaacaaaataagataaaaa----gtgcattaacgaatactacacct--acagtttgaattgaaaaggacatttagatgaa |
24868013 |
T |
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| Q |
201 |
aaatccaatctaaatttaggaaatttaaaatagtctcata--gtagaagaagaaagcaaagaaaaagagttacatcggt |
277 |
Q |
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| T |
24868014 |
aaatccaatctaaatttaggaaacttaaaatagtctcatagtgtagaagaagaaaacaaagaaaaagagatacatcggt |
24868092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 32724021 - 32724081
Alignment:
| Q |
179 |
ttgaaaaggacatttagatgaaaaatccaatctaaatttaggaaatttaaaatagtctcat |
239 |
Q |
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| T |
32724021 |
ttgaaaaggacatttagatgaaaaatccaatctaaatttaggaaacttaaaatagtctcat |
32724081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 6077749 - 6077706
Alignment:
| Q |
28 |
caattgtaaaatagaaagagagtgaaactgccataaatcaccct |
71 |
Q |
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| T |
6077749 |
caattgtcaaatagaaagagagagaaactgccataaatcaccct |
6077706 |
T |
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