View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13240_high_1 (Length: 658)
Name: NF13240_high_1
Description: NF13240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13240_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 40 - 641
Target Start/End: Complemental strand, 37974648 - 37974059
Alignment:
| Q |
40 |
aaaaaatcacctttaggcagaagctacatatgccaacttgagacgcttaatcaaacagacacttcttaaaacgtgaatccaaacatacacccatgagcga |
139 |
Q |
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| T |
37974648 |
aaaaaatgacctttaggcagaagctacatatgccaacttgggacgcttaatcaaacagacactt---aaaacgtcaatccaaacattcacccataagcaa |
37974552 |
T |
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| Q |
140 |
agtgggaatcaatatttaaaaaccataattggaacaacatgatgaatatagtactaaagtgaatctggatcacacgcagtaattgaagtcataaagatgt |
239 |
Q |
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| T |
37974551 |
agtgggaatcaatatttaaaaaccataattggaacaacatgatgaatatagtattaaagtgaatctggatcacacgcagtaattgaactcataaagatgt |
37974452 |
T |
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| Q |
240 |
ataggaacctcttgtcttggtctttgttattgtcatagtgtcagaacttagaaactatgcttggttatgagtggtgagcgatggtccttaagtacacctg |
339 |
Q |
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| T |
37974451 |
ataggaacctcttgtcttggtctttgttattgtcatagtgtcagaacttagaaactatgcttggttatgagtggtgagcgatggtccttaagtacacctg |
37974352 |
T |
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| Q |
340 |
tatggttctcacgaaaatgagatatacaaaattgttacacgtgtcttagtttggagaatcggtccccgcattgagggtcgagcccacagaacaatgcttt |
439 |
Q |
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| T |
37974351 |
tatggttctcacgaaaatgagatatacaaaattgttacacgtgtcttagtttggagaatcggtccccgcattgagggtcgagcccacagaacaatgcttt |
37974252 |
T |
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| Q |
440 |
tgtagtttgttgtgttatgttatgttatgaatgaataccatatttattattatatactagcacgttatatgctgctgcatatatnnnnnnnnnnnngtaa |
539 |
Q |
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| T |
37974251 |
tgtagtttgttgtgttatgt-----tatgaatgaataccata-ttattattatatactagcacgttata---tgctgcatatat--aaaaataaaagtaa |
37974163 |
T |
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| Q |
540 |
gcat--tatatatatatttaggaataaattacaggttgagtatttgcatttgttggatacggtgaactttgttgggcacatgggtctccatgtgacccaa |
637 |
Q |
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| T |
37974162 |
gcattatatatatatatttaggaataaattacaggttgagtatttgcatttgttggatacggtgaactttgttgggcacatgggtctccatgtgacccaa |
37974063 |
T |
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