View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13240_high_10 (Length: 411)
Name: NF13240_high_10
Description: NF13240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13240_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 31 - 395
Target Start/End: Complemental strand, 26611573 - 26611210
Alignment:
| Q |
31 |
ttcaatcatcgaaagatgactggacaaatttattgtaaattgatatctgatgtaacaaactttannnnnnnnagggatcataaaccattattaacatcac |
130 |
Q |
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| T |
26611573 |
ttcaatcatcgaaagatgactgaacaaatttattgtaaattgatatctgatgtaacaaactttattttttttagggatcacaaaccattattaacatcac |
26611474 |
T |
|
| Q |
131 |
tatacacacaactcatgcaaaggaaaatgaccccatttgcatttattgtaactcccaattcacagtatatatgtggtaccacaattgggatgcctctgaa |
230 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
26611473 |
tatacacacaactcatgcaaaggaaaatgaccccatttgtatttattgtaactcccaattcacagtatatatgtggtaccacaattgggatgccactgaa |
26611374 |
T |
|
| Q |
231 |
ccttagtgtaattttacctcattttattttgttctatcataagttagtgggactacttagggtagttgatccgtcggggtcagataacttgaagatggca |
330 |
Q |
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|||||| |||||||||||||||||||||||||| ||||| ||||||| |||| ||||| ||||||||||||||| |||||| ||||||||||||||||| |
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| T |
26611373 |
ccttagattaattttacctcattttattttgttcaatcat-agttagtaggacaacttatggtagttgatccgtcagggtcaaataacttgaagatggca |
26611275 |
T |
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| Q |
331 |
ttaccatttccagcaaatggattgtctttgaccattcaaatcttattaaaccatatattaatcat |
395 |
Q |
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| T |
26611274 |
ttaccatttccagcaaatggattgtctttgaccattcaaatcttattaaaccctatattaatcat |
26611210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 57 - 395
Target Start/End: Complemental strand, 26634196 - 26633860
Alignment:
| Q |
57 |
aatttattgtaaattgatatctgatgtaacaaactttannnnnnnnagggatcataaaccattattaacatcactatacacacaactcatgcaaaggaaa |
156 |
Q |
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| T |
26634196 |
aatttattgtaaattgatatctgat-taacaaattttattttttttagggatcacaaaccattattaatatcactatacacacaactcatgcaaaggaaa |
26634098 |
T |
|
| Q |
157 |
atgaccccatttgcatttattgtaactcccaattcacagtatatatgtggtaccacaattgggatgcctctgaaccttagtgtaattttacctcatttta |
256 |
Q |
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| T |
26634097 |
atgaccccatttgcatttattgtaactcccaattcacagtatatatgtggtaccacaattgggatgcctctgaaccttagtttaattttacctcatttta |
26633998 |
T |
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| Q |
257 |
ttttgttctatcataagttagtgggactacttagggtagttgatccgtcggggtcagataacttgaagatggcattaccatttccagcaaatggattgtc |
356 |
Q |
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| T |
26633997 |
ttttgttcaatcataagttagtaggaccacttagggtagttga-ccgtcggggtcagataacttgaagatggcattaccatttccagcaaatggattgtc |
26633899 |
T |
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| Q |
357 |
tttgaccattcaaatcttattaaaccatatattaatcat |
395 |
Q |
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| T |
26633898 |
tttgaccatgcaaatctaattaaaccttataataatcat |
26633860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 54 - 260
Target Start/End: Complemental strand, 26626742 - 26626537
Alignment:
| Q |
54 |
acaaatttattgtaaattgatatctgatgtaacaaactttannnnnnnnagggatcataaaccattattaacatcactatacacacaactcatgcaaagg |
153 |
Q |
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||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
26626742 |
acaaatttattgtaaattgatatatgatgtaacaaactttggtttttttagggatcacaaaccattactaacatcactatacacacaactaatgcaaagg |
26626643 |
T |
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| Q |
154 |
aaaatgaccccatttgcatttattgtaactcccaattcacagtatatatgtggtaccacaattgggatgcctctgaaccttagtgtaattttacctcatt |
253 |
Q |
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| T |
26626642 |
aaaatgaccccatttgcatttattgtaactcccaattcaaagtatatatgtggtaccacaattgggatgcc-ctgaaccttagtttaattttacctcatt |
26626544 |
T |
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| Q |
254 |
ttatttt |
260 |
Q |
| |
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||||||| |
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| T |
26626543 |
ttatttt |
26626537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 315 - 391
Target Start/End: Complemental strand, 26626176 - 26626100
Alignment:
| Q |
315 |
taacttgaagatggcattaccatttccagcaaatggattgtctttgaccattcaaatcttattaaaccatatattaa |
391 |
Q |
| |
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|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
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| T |
26626176 |
taacttgaagatggcattaccattaccagcaaatagattgtctttgaccattcaaatcttactaaaccatatattaa |
26626100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 304
Target Start/End: Complemental strand, 26626247 - 26626195
Alignment:
| Q |
251 |
attttattttgttctatcataagttagtgggactacttagggtagttgatccgt |
304 |
Q |
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|||||||||| ||| |||||| |||||| |||| |||||||||||||||||||| |
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| T |
26626247 |
attttatttttttcaatcata-gttagtaggaccacttagggtagttgatccgt |
26626195 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 167
Target Start/End: Complemental strand, 26642052 - 26642012
Alignment:
| Q |
127 |
tcactatacacacaactcatgcaaaggaaaatgaccccatt |
167 |
Q |
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||||||||||||||||||||||||| ||||| |||||||| |
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| T |
26642052 |
tcactatacacacaactcatgcaaataaaaattaccccatt |
26642012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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