View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13240_high_20 (Length: 242)
Name: NF13240_high_20
Description: NF13240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13240_high_20 |
 | |
|
| [»] chr7 (4 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 26634483 - 26634247
Alignment:
| Q |
1 |
caaaaagtttattccaagattcaactgaatggaacaaagttaatagattattgctactttataccaaggtctctattctttgtctttggacctatattat |
100 |
Q |
| |
|
|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
26634483 |
caaagagtttattccaagattcaa-----tggaacaaagttaatagattattgctactttataccaaggtctcttttctttgtctttggacctatattat |
26634389 |
T |
|
| Q |
101 |
atagaacggtaacagatttgtggctcttgttttgatgatagattatgagcttcggctcatactcttgtgtgttgtttggaagtctaatgtccaaaccatc |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26634388 |
atagaacggtaacagattcgtggctcttgttttgatgatagatgatgagcttcggctcatactcttgtgtgttgtttggaagtctaatgtccaaaccatc |
26634289 |
T |
|
| Q |
201 |
caagttggtaaatgaatacgatcccagctccataaaattcga |
242 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||| |
|
|
| T |
26634288 |
caagttggtaaatgaatacggtcccagctccataagattcga |
26634247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 11 - 221
Target Start/End: Complemental strand, 26627046 - 26626836
Alignment:
| Q |
11 |
attccaagattcaactgaatggaacaaagttaatagattattgctactttataccaaggtctctattctttgtctttggacctatattatatagaacggt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
26627046 |
attccaagattcaactgaatggaacaaagttaatacattattactaatttataccaaggtttcttttctttgtctttggacctatattatatagaacggt |
26626947 |
T |
|
| Q |
111 |
aacagatttgtggctcttgttttgatgatagattatgagcttcggctcatactcttgtgtgttgtttggaagtctaatgtccaaaccatccaagttggta |
210 |
Q |
| |
|
||| |||||| ||||| |||| ||||||||| |||| ||||||||||||||||||||| || ||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
26626946 |
aacgaatttgtagctctagtttcaatgatagatgatgaccttcggctcatactcttgtgtattttttgggagtctaatgtccaaaccatccaagttcgta |
26626847 |
T |
|
| Q |
211 |
aatgaatacga |
221 |
Q |
| |
|
|||| |||||| |
|
|
| T |
26626846 |
aatgcatacga |
26626836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 26611883 - 26611736
Alignment:
| Q |
1 |
caaaaagtttattccaagattcaactgaatggaacaaagttaatagattattgctactttataccaaggtctctattctttgtctttggacctat----a |
96 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||| ||||||||| | | |
|
|
| T |
26611883 |
caaagagtttattccaagattcaactgaatggaacaaagttaatagattattgctactttataccaaggtttattttctttgtgtttggacctgtgttaa |
26611784 |
T |
|
| Q |
97 |
ttatatagaacggtaacagattt-gtggctcttgttttgatgatagat |
143 |
Q |
| |
|
|||||||||||||||| ||||| || |||||||||||||||| |||| |
|
|
| T |
26611783 |
ttatatagaacggtaagggatttggtagctcttgttttgatgacagat |
26611736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 110
Target Start/End: Complemental strand, 26646477 - 26646385
Alignment:
| Q |
17 |
agattcaactgaatggaacaaagttaatagattattgctactttataccaaggtctctattctttgtctttggacctatattatatagaacggt |
110 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||||| | | ||||| | | | |||||||| |||||| |||||| |||||||||||| |
|
|
| T |
26646477 |
agattccactgaatggaacaaagtttatagattattgctac-tagtgccaagattttttttctttgtttttggatctatataatatagaacggt |
26646385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University