View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13240_high_22 (Length: 236)
Name: NF13240_high_22
Description: NF13240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13240_high_22 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 39518963 - 39519186
Alignment:
| Q |
1 |
taccacataccaagtggcatgatgcacacgccaatattaaagtctttatagattagatttgataatgacctcatccagaatctatgttcttctcccacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39518963 |
taccacataccaagtggcatgatgcacacgccaatattaaagtctttatagattagatttgataatgacctcatccagaatctatgttcttctcccacaa |
39519062 |
T |
|
| Q |
101 |
gatagaccatgcccatttttatttttctttataactattacactccatctttaatacaagacactaaaaaatctaacttccctacatgggcattatcaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39519063 |
gatagaccatgcccatttttatttttctttatgactattacactccatctttaatacaagacactaaaaaatctaacttccctacatgggcattatcaac |
39519162 |
T |
|
| Q |
201 |
cctttaatgcatatgacattaatg |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
39519163 |
cctttaatgcatatgacattaatg |
39519186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University