View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13240_high_24 (Length: 233)
Name: NF13240_high_24
Description: NF13240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13240_high_24 |
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Alignment Details
Target: chr5 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 171 - 214
Target Start/End: Original strand, 40925154 - 40925197
Alignment:
| Q |
171 |
taatttgcaagggttcacaaaaagtgaagataacccaagaggat |
214 |
Q |
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| T |
40925154 |
taatttgcaagggttcacaaaaagtgaagataacccaagaggat |
40925197 |
T |
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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 61 - 155
Target Start/End: Complemental strand, 8158875 - 8158785
Alignment:
| Q |
61 |
acacaagaagaaatgtaataataactatttgtaatatagtgggaaacgaagcaaataaaaacttgtaataggaatgagatgtttgatttaaatca |
155 |
Q |
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| T |
8158875 |
acacaagaagaaatgtaacaa---ctattagtaatatagtgggata-gaaataaataaaaattagtaataacaatgagatgtttgatttaaatca |
8158785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 108 - 155
Target Start/End: Complemental strand, 8149651 - 8149604
Alignment:
| Q |
108 |
gaagcaaataaaaacttgtaataggaatgagatgtttgatttaaatca |
155 |
Q |
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| T |
8149651 |
gaagcaaataaaaatttgtaataccattgagatgtttgatttaaatca |
8149604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 8153854 - 8153822
Alignment:
| Q |
126 |
taataggaatgagatgtttgatttaaatcaatt |
158 |
Q |
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| T |
8153854 |
taatagtaatgagatgtttgatttaaatcaatt |
8153822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 121
Target Start/End: Complemental strand, 8153945 - 8153887
Alignment:
| Q |
59 |
aaacacaagaagaaatgtaataataactatttgtaatatagtgggaaacgaagcaaataaaaa |
121 |
Q |
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| T |
8153945 |
aaacacaagaagaaatgta---ataactacttgtaatatagtgtg-aacgaagtaaataaaaa |
8153887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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