View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13240_high_7 (Length: 472)
Name: NF13240_high_7
Description: NF13240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13240_high_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 387; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 455
Target Start/End: Original strand, 31064116 - 31064575
Alignment:
| Q |
1 |
aagggaagtaggttgaaagggaa-cctgttacatggaaatttcttagaacctttgagtctactaatttgacagatattacccccacgccattttgctgga |
99 |
Q |
| |
|
|||||||| |||||||||| ||| ||||||||| |||| ||||||||||||| ||||| | |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
31064116 |
aagggaagcaggttgaaagagaaacctgttacaaggaactttcttagaacctctgagtttgttaatttgacagacattacccccacgccattttgctgga |
31064215 |
T |
|
| Q |
100 |
attgggccaattcctctgtcgctaaaactccttgattccggccaaacacctaatccaaacagtagggtaatacatattttgaataattaagtcatctaag |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31064216 |
attgggccaattcctctgtcgctaaaactccttgattccggccaaacacctaatccaaacagtagggtaatacatattttgaataattaagtcatctaag |
31064315 |
T |
|
| Q |
200 |
tttaattaaatcattaataaaaaagaaacagatctttcacatggagattataatattgaatctgtcaatgttatcatttattttaataaaaataattgaa |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
31064316 |
tttaattaaatcattaataaaaaagaaacagatctttcacatggagattataatattgaatctgtcaatgttatcatctattttaataaaaataattgaa |
31064415 |
T |
|
| Q |
300 |
attctttgactcgtgaactgtacttgacttaattattaccacg----tgtattgtgataaaataaaatatagtatttggataacaatcattaagtcaaga |
395 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
31064416 |
attctttgactcgtgaactgtacttgacttaattattaccacgtgtatgtattgtgataaaataaaatatagtatttggataacaatgattaagtcaaga |
31064515 |
T |
|
| Q |
396 |
aagcatcttgccaactcaaagaaagcctgttgtttttgtctattttgatatcaattaatt |
455 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31064516 |
aagcatcttgccaactcaaacaaagcctgttgtttttgtctattttgatatcaattaatt |
31064575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 31110914 - 31111159
Alignment:
| Q |
1 |
aagggaagtaggttgaaagggaacctgttacatggaaatttcttagaacctttgagtctactaatttgacagatattacccccacgccattttgctggaa |
100 |
Q |
| |
|
|||||||| |||||||||| ||||||||| ||||||| ||| ||||| |||||| | || ||||||||| || |||||||||||||| ||||||| |
|
|
| T |
31110914 |
aagggaagcaggttgaaagagaacctgttgcatggaacttttttagatgtattgagtttgtcaagttgacagatgtttcccccacgccatttcgctggaa |
31111013 |
T |
|
| Q |
101 |
ttgggccaattcctctgtcgctaaaactccttgattccggccaaacacctaatccaaacagtagggtaat-acatattttgaataattaagtcatctaag |
199 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||| |||||||||||| ||||||||| |||| |||| | ||||||||||||||||||||||||| | |
|
|
| T |
31111014 |
ttgggccaattcctctgtcgctaaaactcttagattcgggccaaacacctgatccaaacaataggataataatatattttgaataattaagtcatctagg |
31111113 |
T |
|
| Q |
200 |
tttaattaaatcattaat-aaaaaagaaacagatctttcacatgga |
244 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
31111114 |
tttaattaaatcattaataaaaaaagaaacagatcattcacatgga |
31111159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 22 - 187
Target Start/End: Original strand, 31051722 - 31051888
Alignment:
| Q |
22 |
aacctgttacatggaaatttcttagaacctttgagtctactaatttgacagatattacccccacgccattttgctggaattgggccaattcctctgtcgc |
121 |
Q |
| |
|
|||||||||||||||| |||||| |||||| | ||| | ||||||||||||| || |||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
31051722 |
aacctgttacatggaactttctttgaacctcttagtttgttaatttgacagatgtttcccccacgccattttgctggaattggacctattcctctgtcgt |
31051821 |
T |
|
| Q |
122 |
taaaactccttgattccggccaaacacctaatccaaacagtagggtaa-tacatattttgaataatt |
187 |
Q |
| |
|
|||||||| ||||| |||||||||||||||||||||| |||| ||| || ||||||||||||||| |
|
|
| T |
31051822 |
taaaactcgccgattcgggccaaacacctaatccaaacaataggataattatatattttgaataatt |
31051888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 31147184 - 31147332
Alignment:
| Q |
12 |
gttgaaagggaacctgttacatggaaatttcttagaacctttgagtctactaatttgacagatattacccccacgccattttgctggaattgggccaatt |
111 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||| |||||| | || |||||| || ||||||||||||||| || ||||||||| || ||| |
|
|
| T |
31147184 |
gttgaaagagaacctgttacatggaactttcttagaagtattgagtttgtcaagttgacaaatgttacccccacgccatcttaatggaattggacctatt |
31147283 |
T |
|
| Q |
112 |
cctctgtcgctaaaactccttgattccggccaaacacctaatccaaaca |
160 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
31147284 |
cctctgtcgttaaaactctccgattccggccaaacacctaatacaaaca |
31147332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 12 - 160
Target Start/End: Original strand, 31165009 - 31165157
Alignment:
| Q |
12 |
gttgaaagggaacctgttacatggaaatttcttagaacctttgagtctactaatttgacagatattacccccacgccattttgctggaattgggccaatt |
111 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||| |||||| | || |||||| || ||||||||||||||| || ||||||||| || ||| |
|
|
| T |
31165009 |
gttgaaagagaacctgttacatggaactttcttagaagtattgagtttgtcaagttgacaaatgttacccccacgccatcttaatggaattggacctatt |
31165108 |
T |
|
| Q |
112 |
cctctgtcgctaaaactccttgattccggccaaacacctaatccaaaca |
160 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||||| |||||| |
|
|
| T |
31165109 |
cctctgtcgtgaaaactctccgattccggccaaacacctaatacaaaca |
31165157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 391 - 436
Target Start/End: Original strand, 31111382 - 31111427
Alignment:
| Q |
391 |
caagaaagcatcttgccaactcaaagaaagcctgttgtttttgtct |
436 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
31111382 |
caagaaagcatcttgccaactcaaagaaagcctgtagtttttgtct |
31111427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 235 - 273
Target Start/End: Original strand, 31111180 - 31111218
Alignment:
| Q |
235 |
ttcacatggagattataatattgaatctgtcaatgttat |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31111180 |
ttcacatggagattataatattgaatctgtcaatgttat |
31111218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 274
Target Start/End: Original strand, 31051966 - 31051996
Alignment:
| Q |
244 |
agattataatattgaatctgtcaatgttatc |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
31051966 |
agattataatattgaatctgtcaatgttatc |
31051996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 390 - 436
Target Start/End: Original strand, 31052184 - 31052230
Alignment:
| Q |
390 |
tcaagaaagcatcttgccaactcaaagaaagcctgttgtttttgtct |
436 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||| ||| |||||||||| |
|
|
| T |
31052184 |
tcaagaaagcatcttgcccacttaaagaaagcatgtggtttttgtct |
31052230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University