View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13240_high_8 (Length: 451)
Name: NF13240_high_8
Description: NF13240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13240_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 1e-94; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 253 - 436
Target Start/End: Original strand, 7078253 - 7078436
Alignment:
| Q |
253 |
tgtgatgaatcaaatccagaaatattagcagattgcttcaaagcagatctccaccttagcaccttgtaagaactataattttgttcatgttgagcaaaag |
352 |
Q |
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| T |
7078253 |
tgtgatgaatcaaatccagaaatatttgcagattgcttcaaagcagatctccaccttagaaccttgtaagaactataattttgttcatgttgagcaaaag |
7078352 |
T |
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| Q |
353 |
catctctataaatcccattttggtaccttacaactgtgggctctacttggtagaaaactggcattagaatcctaccatattttt |
436 |
Q |
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| T |
7078353 |
catctctataaatcccattttggtaccttacaactgtgggctctacttggtagaaaactggcattagaatcctaccatattttt |
7078436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 5 - 188
Target Start/End: Original strand, 7078003 - 7078187
Alignment:
| Q |
5 |
ttagatcggtcaaacaaacatagatctccataatataaactctcataaatcactaataaggtagtttaataacaacttagatcggtcaaacaaacaacat |
104 |
Q |
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| T |
7078003 |
ttagaccggtcaaacaaacttagatctccataatataatctctcataaatcactaataaggtagtttaataacaacttagatcggtcaaacaaacaacat |
7078102 |
T |
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| Q |
105 |
ccttgtttagtttcgatattgtagaactttggagaagcagaaaaa-agatgaagagacacattaacttttttaatttgttcaatc |
188 |
Q |
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| T |
7078103 |
ccttgtttagtttcgatattgtagaactttggagaagcagaaaaagagatgaagagacacattaacttttttaatttgttcaatc |
7078187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 254 - 431
Target Start/End: Complemental strand, 7028974 - 7028797
Alignment:
| Q |
254 |
gtgatgaatcaaatccagaaatattagcagattgcttcaaagcagatctccaccttagcaccttgtaagaactataattttgttcatgttgagcaaaagc |
353 |
Q |
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| T |
7028974 |
gtgatgaatcaaatccagacatattagcagattgcttcaaagcagatctccagcttagcaccttgtaggaactatacttttgttcatgttgagcaaaagc |
7028875 |
T |
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| Q |
354 |
atctctataaatcccattttggtaccttacaactgtgggctctacttggtagaaaactggcattagaatcctaccata |
431 |
Q |
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| T |
7028874 |
atctctataagtcccattttgatgccgtacatctgagggatatacttggtagaaaactggcattagaaccctaccata |
7028797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 253 - 431
Target Start/End: Complemental strand, 7035677 - 7035499
Alignment:
| Q |
253 |
tgtgatgaatcaaatccagaaatattagcagattgcttcaaagcagatctccaccttagcaccttgtaagaactataattttgttcatgttgagcaaaag |
352 |
Q |
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|||||||||||||||||||| ||||| |||||||||||||||||| ||||||| ||||||||||| | || |||| |||||||||||||||||||||| |
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| T |
7035677 |
tgtgatgaatcaaatccagacatattggcagattgcttcaaagcatatctccaacttagcaccttattcaaattatacttttgttcatgttgagcaaaag |
7035578 |
T |
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| Q |
353 |
catctctataaatcccattttggtaccttacaactgtgggctctacttggtagaaaactggcattagaatcctaccata |
431 |
Q |
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| T |
7035577 |
catctctataactcccattttgatgccgtacatctgagggctctacttggtagaaaactggcaatagaatcctgccata |
7035499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 258 - 435
Target Start/End: Complemental strand, 7021367 - 7021190
Alignment:
| Q |
258 |
tgaatcaaatccagaaatattagcagattgcttcaaagcagatctccaccttagcaccttgtaagaactataattttgttcatgttgagcaaaagcatct |
357 |
Q |
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||||| ||||||||||||||| ||||||| |||||||| ||||||| || |||||||| |||||| |||||||| || ||||| ||||||||||| |
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| T |
7021367 |
tgaatgaaatccagaaatattggcagattttgtcaaagcatgtctccacttttccaccttgtcggaactaaaattttgtccaagttgaacaaaagcatct |
7021268 |
T |
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| Q |
358 |
ctataaatcccattttggtaccttacaactgtgggctctacttggtagaaaactggcattagaatcctaccatatttt |
435 |
Q |
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| T |
7021267 |
ttataagcaccagtttgatgtcgtacttctgtaggatctacttggtagaaaactggcaatagaatcctatcatatttt |
7021190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 306
Target Start/End: Original strand, 7100407 - 7100460
Alignment:
| Q |
253 |
tgtgatgaatcaaatccagaaatattagcagattgcttcaaagcagatctccac |
306 |
Q |
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| T |
7100407 |
tgtgatgaatgaaaaccagagatatctgcagatttcttcaaagcagatctccac |
7100460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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