View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13240_low_12 (Length: 339)
Name: NF13240_low_12
Description: NF13240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13240_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 121 - 322
Target Start/End: Complemental strand, 22385237 - 22385035
Alignment:
| Q |
121 |
cattgttcaaatggatctttgatgaatacataaatattttaccacaaaaacacacacagatcaaacattttctttatttnnnnnnnnt-taaaacaataa |
219 |
Q |
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| T |
22385237 |
cattgttcaaatggatctttgatgaatacataaattttttaccacaaaaacacacacagatcaaacattttctttatttaaaaaaaaaataaaacaataa |
22385138 |
T |
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| Q |
220 |
aagtaggaaaattaatcaagcactaggaaaggaacttgaatatgatcctagaaaaaatttgaaggagatttacattgtgcaatgcaaattgatatactca |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
22385137 |
aagtaggaaaattaatcaagcactaggaaaggaacttgaatatgatcctagaaaaaatttgaaggagatttacattgtgcaatgcatattgatatactca |
22385038 |
T |
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| Q |
320 |
taa |
322 |
Q |
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||| |
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| T |
22385037 |
taa |
22385035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 22385356 - 22385285
Alignment:
| Q |
1 |
ttgttacataaagatcatcattatccatacacagtcatattaaatcaattaaagattataacaacaatattc |
72 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22385356 |
ttgttacataaagatcatcattatccatacacagtcatattaaatcaattaaagattataacaacaatattc |
22385285 |
T |
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