View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13240_low_14 (Length: 296)
Name: NF13240_low_14
Description: NF13240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13240_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 15 - 284
Target Start/End: Original strand, 27716559 - 27716832
Alignment:
| Q |
15 |
agttattacaaatagattttcttagaatgtaagtaaaaatgcagagacaaaca----taaaccccaaacgcaagctaccttaattgtctaatttcattac |
110 |
Q |
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| T |
27716559 |
agttaatacaaatagattttcttagaatgtaagtaaaaatgcagagacaaccaaatataaaccccaaacgcaagctacctcaattgtctaatttcattac |
27716658 |
T |
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| Q |
111 |
ttcttcggtaaggatataattaacaaacaatatggtagctttctttaaattgaagctgaaccaatgtagctttctccataatctctagaatatgaagcaa |
210 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
27716659 |
ttcttcggtaaggatataatttacaaacaatatggtagctttctttaaattgaagccgaaccaatgtagctttctccttaatctctagaatatgaagcaa |
27716758 |
T |
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| Q |
211 |
ccagcatcattttaagtgaagg-tttagcttgatttccacaagcagcccctcccacaggtttctttttcatctca |
284 |
Q |
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|||||||||||| |||||||| |||||||| |||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
27716759 |
tcagcatcatttt-agtgaaggttttagcttaatttccacaaccagcacctcccacaggtttctttttcatctca |
27716832 |
T |
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