View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13240_low_15 (Length: 274)

Name: NF13240_low_15
Description: NF13240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13240_low_15
NF13240_low_15
[»] chr5 (3 HSPs)
chr5 (146-227)||(40640268-40640349)
chr5 (146-218)||(32361829-32361901)
chr5 (146-218)||(32379060-32379132)
[»] chr4 (4 HSPs)
chr4 (146-245)||(38507769-38507867)
chr4 (146-223)||(30161971-30162048)
chr4 (146-217)||(55290067-55290138)
chr4 (9-112)||(38507627-38507728)
[»] chr8 (5 HSPs)
chr8 (146-223)||(31877212-31877289)
chr8 (146-218)||(31547809-31547881)
chr8 (146-217)||(31544656-31544727)
chr8 (146-217)||(31559518-31559589)
chr8 (146-217)||(31556512-31556583)
[»] chr7 (2 HSPs)
chr7 (146-218)||(30034438-30034510)
chr7 (146-217)||(45868103-45868174)
[»] chr2 (6 HSPs)
chr2 (146-218)||(18229431-18229503)
chr2 (146-217)||(6493518-6493589)
chr2 (146-217)||(8328455-8328526)
chr2 (146-217)||(9596926-9596997)
chr2 (146-217)||(33994624-33994695)
chr2 (146-217)||(21281553-21281623)
[»] chr1 (2 HSPs)
chr1 (146-218)||(38624995-38625067)
chr1 (146-218)||(46613935-46614007)
[»] chr3 (2 HSPs)
chr3 (146-217)||(32053544-32053615)
chr3 (146-223)||(50683113-50683190)


Alignment Details
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 146 - 227
Target Start/End: Original strand, 40640268 - 40640349
Alignment:
Q  146 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgctcgatggtaa 227  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  40640268 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgcttgatggtaa 40640349  T

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Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 146 - 218
Target Start/End: Original strand, 32361829 - 32361901
Alignment:
Q  146 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32361829 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 32361901  T

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Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 146 - 218
Target Start/End: Original strand, 32379060 - 32379132
Alignment:
Q  146 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32379060 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 32379132  T

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Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 146 - 245
Target Start/End: Original strand, 38507769 - 38507867
Alignment:
Q  146 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgctcgatggtaaaactttattacttttagt 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||| | ||||||||    
T  38507769 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct-gatgttaacactttacttcttttagt 38507867  T

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Target: chr4; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 30162048 - 30161971
Alignment:
Q  146 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgctcgatg 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30162048 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgcttgatg 30161971  T

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Target: chr4; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 55290067 - 55290138
Alignment:
Q  146 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55290067 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 55290138  T

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Target: chr4; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 9 - 112
Target Start/End: Original strand, 38507627 - 38507728
Alignment:
Q  9 agcacagaaaagagaaaataaagtatagcaaattataatttacagnnnnnnnngtttcaagtttcaaccaatgtagtgcgatcatagcaaagcgattcat 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||  |||||||||||||||||||||||    
T  38507627 agcacagaaaagagaaaataaagtatagcaaattataatttacagaaaaaaaagtttcaagtttcaaccaatgta--gcgatcatagcaaagcgattcat 38507724  T
Q  109 agtt 112  Q
    ||||    
T  38507725 agtt 38507728  T

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Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 146 - 223
Target Start/End: Original strand, 31877212 - 31877289
Alignment:
Q  146 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgctcgatg 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31877212 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgcttgatg 31877289  T

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Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 146 - 218
Target Start/End: Complemental strand, 31547881 - 31547809
Alignment:
Q  146 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31547881 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 31547809  T

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Target: chr8; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 146 - 217
Target Start/End: Complemental strand, 31544727 - 31544656
Alignment:
Q  146 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31544727 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 31544656  T

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Target: chr8; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 146 - 217
Target Start/End: Complemental strand, 31559589 - 31559518
Alignment:
Q  146 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31559589 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 31559518  T

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Target: chr8; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 146 - 217
Target Start/End: Complemental strand, 31556583 - 31556512
Alignment:
Q  146 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 217  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  31556583 gcggtgagcgtggatcaaacacgcgaccttcagatcttcaatctgacgctctcccaactgagctatccccgc 31556512  T

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Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 146 - 218
Target Start/End: Original strand, 30034438 - 30034510
Alignment:
Q  146 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30034438 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 30034510  T

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Target: chr7; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 45868103 - 45868174
Alignment:
Q  146 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45868103 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 45868174  T

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Target: chr2 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 146 - 218
Target Start/End: Complemental strand, 18229503 - 18229431
Alignment:
Q  146 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18229503 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 18229431  T

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Target: chr2; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 146 - 217
Target Start/End: Complemental strand, 6493589 - 6493518
Alignment:
Q  146 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6493589 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 6493518  T

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Target: chr2; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 8328455 - 8328526
Alignment:
Q  146 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8328455 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 8328526  T

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Target: chr2; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 146 - 217
Target Start/End: Complemental strand, 9596997 - 9596926
Alignment:
Q  146 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9596997 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 9596926  T

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Target: chr2; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 33994624 - 33994695
Alignment:
Q  146 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33994624 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 33994695  T

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Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 21281553 - 21281623
Alignment:
Q  146 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 217  Q
    ||||||||| |||||| |||||||||||||| |||||||| ||||| |||||||||||||||||||||||||    
T  21281553 gcggtgagcatggatcaaacacgcgaccttcggatcttca-tctgaggctctcccaactgagctatccccgc 21281623  T

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Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 146 - 218
Target Start/End: Original strand, 38624995 - 38625067
Alignment:
Q  146 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38624995 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 38625067  T

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Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 146 - 218
Target Start/End: Complemental strand, 46614007 - 46613935
Alignment:
Q  146 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46614007 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 46613935  T

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Target: chr3 (Bit Score: 72; Significance: 8e-33; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 146 - 217
Target Start/End: Original strand, 32053544 - 32053615
Alignment:
Q  146 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32053544 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 32053615  T

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Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 146 - 223
Target Start/End: Original strand, 50683113 - 50683190
Alignment:
Q  146 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgctcgatg 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||    
T  50683113 gcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatcccagcttgatg 50683190  T

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