View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13240_low_17 (Length: 262)
Name: NF13240_low_17
Description: NF13240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13240_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 9 - 245
Target Start/End: Complemental strand, 625987 - 625751
Alignment:
| Q |
9 |
agcagagagttcacctgatgatgtgacaaatgaggggagtacaacatcaacaccagttagagatgatagaaatcatgccattgcagttgcagaagccact |
108 |
Q |
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| T |
625987 |
agcagagagttcacctgatgatgtgacaaatgaggggagtacaacatcaacaccagttagagatgatagaaatcatgccattgcagttgcagaagccact |
625888 |
T |
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| Q |
109 |
gcagccgcagcttcagctgctgtggtagctgctcaagcagctgctagagttgtgagattggctggttatggacgccataacaaggaagaaagagcagcaa |
208 |
Q |
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| T |
625887 |
gcagcagcagcttcagctgctgtggtagctgctcaagcagctgctagagttgtgagattggctggttatggacgccataacaaggaagaaagagcagcaa |
625788 |
T |
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| Q |
209 |
cattcattcaatcacactatagaggatacctagtaag |
245 |
Q |
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| T |
625787 |
cattcattcaatcacactatagaggatacctagtaag |
625751 |
T |
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Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 76 - 246
Target Start/End: Original strand, 41671759 - 41671929
Alignment:
| Q |
76 |
agaaatcatgccattgcagttgcagaagccactgcagccgcagcttcagctgctgtggtagctgctcaagcagctgctagagttgtgagattggctggtt |
175 |
Q |
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||||||||||| ||||| ||| | ||| || ||||| |||||| |||||| |||| || |||||||||||||||||||||||||||||||| ||| |
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| T |
41671759 |
agaaatcatgcaattgcctatgctgcagcaacagcagcagcagctgaagctgcagtggctgcggctcaagcagctgctagagttgtgagattggcaggtc |
41671858 |
T |
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| Q |
176 |
atggacgccataacaaggaagaaagagcagcaacattcattcaatcacactatagaggatacctagtaagt |
246 |
Q |
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| T |
41671859 |
atggacgtaactctaaggtcgaaaaagcagcaatactaattcaatcctactatagaggatacctagtaagt |
41671929 |
T |
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