View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13240_low_2 (Length: 639)
Name: NF13240_low_2
Description: NF13240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13240_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 352; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 253 - 620
Target Start/End: Original strand, 7078253 - 7078620
Alignment:
| Q |
253 |
tgtgatgaatcaaatccagaaatattagcagattgcttcaaagcagatctccaccttagcaccttgtaagaactataattttgttcatgttgagcaaaag |
352 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
7078253 |
tgtgatgaatcaaatccagaaatatttgcagattgcttcaaagcagatctccaccttagaaccttgtaagaactataattttgttcatgttgagcaaaag |
7078352 |
T |
|
| Q |
353 |
catctctataaatcccattttggtaccttacaactgtgggctctacttggtagaaaactggcattagaatcctaccatatttttctctacactcaactat |
452 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7078353 |
catctctataaatcccattttggtaccttacaactgtgggctctacttggtagaaaactggcattagaatcctaccatatttttctctacactcaactat |
7078452 |
T |
|
| Q |
453 |
tttcacaagctcctccatacaccaatatgaagatgcaaagtttggagagaatataaccaacgaaatgaatgatttttcaattgctctttgaattgctgat |
552 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
7078453 |
tttcacaagctcctccatacaccaatatgaagatgcaaagtttggagagaatataaccaatgaaatgaatgatttttcaattgctctttgaattgctgat |
7078552 |
T |
|
| Q |
553 |
aattcatctcctgttttaagctttttgtcagaaaaaacaacgattctctttcgcgacaaagcgtcgag |
620 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
7078553 |
aattcatctcctgttttaagctttttgtcagaaaaaacaacgattctctttcgcgacaaagcttcgag |
7078620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 254 - 620
Target Start/End: Complemental strand, 7028974 - 7028608
Alignment:
| Q |
254 |
gtgatgaatcaaatccagaaatattagcagattgcttcaaagcagatctccaccttagcaccttgtaagaactataattttgttcatgttgagcaaaagc |
353 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||||| |
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|
| T |
7028974 |
gtgatgaatcaaatccagacatattagcagattgcttcaaagcagatctccagcttagcaccttgtaggaactatacttttgttcatgttgagcaaaagc |
7028875 |
T |
|
| Q |
354 |
atctctataaatcccattttggtaccttacaactgtgggctctacttggtagaaaactggcattagaatcctaccatatttttctctacactcaactatt |
453 |
Q |
| |
|
|||||||||| |||||||||| | || |||| ||| ||| | |||||||||||||||||||||||||| ||||||||| ||| |||| ||||| |||||| |
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| T |
7028874 |
atctctataagtcccattttgatgccgtacatctgagggatatacttggtagaaaactggcattagaaccctaccataatttgctctgcactcgactatt |
7028775 |
T |
|
| Q |
454 |
ttcacaagctcctccatacaccaatatgaagatgcaaagtttggagagaatataaccaacgaaatgaatgatttttcaattgctctttgaattgctgata |
553 |
Q |
| |
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||||||||||| |||| |||||||| ||||||||||||||||||||| ||||| ||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
7028774 |
ttcacaagctcgtccaaacaccaatgtgaagatgcaaagtttggagaaaatatgaccaatgaaatcaatgatttttcaattgctctttgaattgctgata |
7028675 |
T |
|
| Q |
554 |
attcatctcctgttttaagctttttgtcagaaaaaacaacgattctctttcgcgacaaagcgtcgag |
620 |
Q |
| |
|
|||| ||||||||| | |||||||||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
7028674 |
attcgtctcctgttattagctttttgtcagaaaaaacaatgattccctttcgcgacaaagcgtcgag |
7028608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 253 - 614
Target Start/End: Complemental strand, 7035677 - 7035316
Alignment:
| Q |
253 |
tgtgatgaatcaaatccagaaatattagcagattgcttcaaagcagatctccaccttagcaccttgtaagaactataattttgttcatgttgagcaaaag |
352 |
Q |
| |
|
|||||||||||||||||||| ||||| |||||||||||||||||| ||||||| ||||||||||| | || |||| |||||||||||||||||||||| |
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| T |
7035677 |
tgtgatgaatcaaatccagacatattggcagattgcttcaaagcatatctccaacttagcaccttattcaaattatacttttgttcatgttgagcaaaag |
7035578 |
T |
|
| Q |
353 |
catctctataaatcccattttggtaccttacaactgtgggctctacttggtagaaaactggcattagaatcctaccatatttttctctacactcaactat |
452 |
Q |
| |
|
||||||||||| |||||||||| | || |||| ||| |||||||||||||||||||||||||| ||||||||| ||||| ||| |||| ||||| ||||| |
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| T |
7035577 |
catctctataactcccattttgatgccgtacatctgagggctctacttggtagaaaactggcaatagaatcctgccataatttgctctgcactcgactat |
7035478 |
T |
|
| Q |
453 |
tttcacaagctcctccatacaccaatatgaagatgcaaagtttggagagaatataaccaacgaaatgaatgatttttcaattgctctttgaattgctgat |
552 |
Q |
| |
|
|||||||||||| |||| |||||||| |||||||||||||||||| || ||||| ||||| ||||| |||||||||||||||||| | |||| | ||||| |
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|
| T |
7035477 |
tttcacaagctcatccaaacaccaatgtgaagatgcaaagtttggtgaaaatatgaccaatgaaatcaatgatttttcaattgctgtatgaagttctgat |
7035378 |
T |
|
| Q |
553 |
aattcatctcctgttttaagctttttgtcagaaaaaacaacgattctctttcgcgacaaagc |
614 |
Q |
| |
|
| ||| |||||| | |||||| ||||||||||| || || ||| |||||||||| ||||| |
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|
| T |
7035377 |
atttcgtctcctcctcgaagcttcttgtcagaaaagactacaattttctttcgcgaaaaagc |
7035316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 5 - 188
Target Start/End: Original strand, 7078003 - 7078187
Alignment:
| Q |
5 |
ttagatcggtcaaacaaacatagatctccataatataaactctcataaatcactaataaggtagtttaataacaacttagatcggtcaaacaaacaacat |
104 |
Q |
| |
|
||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7078003 |
ttagaccggtcaaacaaacttagatctccataatataatctctcataaatcactaataaggtagtttaataacaacttagatcggtcaaacaaacaacat |
7078102 |
T |
|
| Q |
105 |
ccttgtttagtttcgatattgtagaactttggagaagcagaaaaa-agatgaagagacacattaacttttttaatttgttcaatc |
188 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
7078103 |
ccttgtttagtttcgatattgtagaactttggagaagcagaaaaagagatgaagagacacattaacttttttaatttgttcaatc |
7078187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 258 - 537
Target Start/End: Complemental strand, 7021367 - 7021088
Alignment:
| Q |
258 |
tgaatcaaatccagaaatattagcagattgcttcaaagcagatctccaccttagcaccttgtaagaactataattttgttcatgttgagcaaaagcatct |
357 |
Q |
| |
|
||||| ||||||||||||||| ||||||| |||||||| ||||||| || |||||||| |||||| |||||||| || ||||| ||||||||||| |
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|
| T |
7021367 |
tgaatgaaatccagaaatattggcagattttgtcaaagcatgtctccacttttccaccttgtcggaactaaaattttgtccaagttgaacaaaagcatct |
7021268 |
T |
|
| Q |
358 |
ctataaatcccattttggtaccttacaactgtgggctctacttggtagaaaactggcattagaatcctaccatatttttctctacactcaactattttca |
457 |
Q |
| |
|
||||| ||| |||| | | ||| |||| || |||||||||||||||||||||| |||||||||| |||||||| |||| || ||||||||||||| |
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|
| T |
7021267 |
ttataagcaccagtttgatgtcgtacttctgtaggatctacttggtagaaaactggcaatagaatcctatcatattttgctctgcaatcaactattttca |
7021168 |
T |
|
| Q |
458 |
caagctcctccatacaccaatatgaagatgcaaagtttggagagaatataaccaacgaaatgaatgatttttcaattgct |
537 |
Q |
| |
|
||||||| |||| |||||||| |||| ||| |||||||||||||||||| ||||| |||||||||||||||||||||| |
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|
| T |
7021167 |
caagctcatccaaacaccaatgtgaatatgaaaagtttggagagaatatgaccaaatgaatgaatgatttttcaattgct |
7021088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 331 - 537
Target Start/End: Original strand, 7069807 - 7070013
Alignment:
| Q |
331 |
ttttgttcatgttgagcaaaagcatctctataaatcccattttggtaccttacaactgtgggctctacttggtagaaaactggcattagaatcctaccat |
430 |
Q |
| |
|
||||||||||||| | |||| |||||| |||| | |||||||| | ||| |||| |||||| || |||| ||||||||| |||| || ||| | |||| |
|
|
| T |
7069807 |
ttttgttcatgttcaacaaatgcatctgcataagttccattttgatgcctcacaattgtgggatcaactttgtagaaaacaggcaataaaatgtttccat |
7069906 |
T |
|
| Q |
431 |
atttttctctacactcaactattttcacaagctcctccatacaccaatatgaagatgcaaagtttggagagaatataaccaacgaaatgaatgatttttc |
530 |
Q |
| |
|
||| |||||||| ||||| | ||| || ||||| |||| ||||||| ||||||| ||| ||||| |||||||||| || || ||||| | ||| |||| |
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|
| T |
7069907 |
ctttctctctacagtcaacaactttgaccagctcatccaaacaccaagatgaagaagcatagttttgagagaatatgactaatgaaattgaagatgtttc |
7070006 |
T |
|
| Q |
531 |
aattgct |
537 |
Q |
| |
|
||||||| |
|
|
| T |
7070007 |
aattgct |
7070013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 331 - 506
Target Start/End: Original strand, 7086873 - 7087048
Alignment:
| Q |
331 |
ttttgttcatgttgagcaaaagcatctctataaatcccattttggtaccttacaactgtgggctctacttggtagaaaactggcattagaatcctaccat |
430 |
Q |
| |
|
||||||||||||| ||||| |||| | |||| |||| || || | ||| |||||||| || || |||| ||| ||||| |||| || |||| |||| |
|
|
| T |
7086873 |
ttttgttcatgttctgcaaatgcatttgcataagtccccttctgatgcctcacaactgtagggtcaactttgtaaaaaacaggcaataaaatctgtccat |
7086972 |
T |
|
| Q |
431 |
atttttctctacactcaactattttcacaagctcctccatacaccaatatgaagatgcaaagtttggagagaatat |
506 |
Q |
| |
|
||| |||||||||||||| ||||| |||||||| |||| |||||| | |||||| ||| ||||| |||||||||| |
|
|
| T |
7086973 |
ctttctctctacactcaacaattttgacaagctcatccaaacaccattttgaagaagcatagttttgagagaatat |
7087048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 253 - 306
Target Start/End: Original strand, 7100407 - 7100460
Alignment:
| Q |
253 |
tgtgatgaatcaaatccagaaatattagcagattgcttcaaagcagatctccac |
306 |
Q |
| |
|
|||||||||| ||| ||||| |||| ||||||| ||||||||||||||||||| |
|
|
| T |
7100407 |
tgtgatgaatgaaaaccagagatatctgcagatttcttcaaagcagatctccac |
7100460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 427 - 537
Target Start/End: Original strand, 4003257 - 4003367
Alignment:
| Q |
427 |
ccatatttttctctacactcaactattttcacaagctcctccatacaccaatatgaagatgcaaagtttggagagaatataaccaacgaaatgaatgatt |
526 |
Q |
| |
|
|||||||| ||| | ||||||| |||||||||||| || || | |||||||| |||||| ||| ||||| |||||||| ||||| |||||||||||| |
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|
| T |
4003257 |
ccatatttctctttgcactcaattattttcacaagttcttctaaacaccaatgtgaagaagcatagttttctgagaatatgaccaatgaaatgaatgatc |
4003356 |
T |
|
| Q |
527 |
tttcaattgct |
537 |
Q |
| |
|
|||||||||| |
|
|
| T |
4003357 |
cttcaattgct |
4003367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 442 - 519
Target Start/End: Original strand, 3811963 - 3812040
Alignment:
| Q |
442 |
cactcaactattttcacaagctcctccatacaccaatatgaagatgcaaagtttggagagaatataaccaacgaaatg |
519 |
Q |
| |
|
||||||| ||||||||||||||| || | |||||||| |||||| ||| ||||| |||||||| ||||| |||||| |
|
|
| T |
3811963 |
cactcaattattttcacaagctcatctaaacaccaatgtgaagaagcatagttttctgagaatatgaccaatgaaatg |
3812040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 428 - 525
Target Start/End: Complemental strand, 3916105 - 3916008
Alignment:
| Q |
428 |
catatttttctctacactcaactattttcacaagctcctccatacaccaatatgaagatgcaaagtttggagagaatataaccaacgaaatgaatgat |
525 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||| || | | |||||||| |||| | ||| ||||| |||||||| | ||| |||||||||||| |
|
|
| T |
3916105 |
catatttctctttacactcaactattttcacaagttcttttaaacaccaatgtgaacaagcatagttttctgagaatatgatcaatgaaatgaatgat |
3916008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 427 - 519
Target Start/End: Original strand, 3821521 - 3821613
Alignment:
| Q |
427 |
ccatatttttctctacactcaactattttcacaagctcctccatacaccaatatgaagatgcaaagtttggagagaatataaccaacgaaatg |
519 |
Q |
| |
|
|||||||| ||| | ||||| | ||||||||||||||| || | |||||||| |||||| ||| ||||| |||||||| ||||| |||||| |
|
|
| T |
3821521 |
ccatatttctctttgcactcgattattttcacaagctcatctaaacaccaatgtgaagaagcatagttttttgagaatatgaccaatgaaatg |
3821613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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