View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13240_low_25 (Length: 234)
Name: NF13240_low_25
Description: NF13240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13240_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 23445728 - 23445927
Alignment:
| Q |
18 |
agattttattacaatttgttaagtctgttgtcaataagtttgtcgctctcttgtaatatgtggtcctatatgtgctagtaagctattgtgataaaattag |
117 |
Q |
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| T |
23445728 |
agattttattacagtttgttaagtctgttgtcaataagtttgtcgctctcttgtaatatgtggtcctatatgtgctagtaagctattgtaataaaattag |
23445827 |
T |
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| Q |
118 |
atttgtcatgttcatggtagtatctgaaatctttgttgcacaactttgaattaataaaatgtctttattgttgaagctactttacttcgattgctttttc |
217 |
Q |
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| T |
23445828 |
atttgtcatgttcatggtagtatctgaaatctttgttgcacaactttgaattcataaaatgtctttattgttgaagctactttacttcgattgctttttc |
23445927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 140 - 224
Target Start/End: Original strand, 23446881 - 23446964
Alignment:
| Q |
140 |
tctgaaatctttgttgcacaactttgaattaataaaatgtctttattgttgaagctactttacttcgattgctttttcatctctc |
224 |
Q |
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| T |
23446881 |
tctgtaatctttgttgcacaaatttgaattcataaattgtctttattgttgaa-ctactctacttcgattgctttctcatatctc |
23446964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 111
Target Start/End: Complemental strand, 24298779 - 24298697
Alignment:
| Q |
29 |
caatttgttaagtctgttgtcaataagtttgtcgctctcttgtaatatgtggtcctatatgtgctagtaagctattgtgataa |
111 |
Q |
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| T |
24298779 |
caatttgttgactttgttatcaattagttagtccttctcttgtaacatgtggtcctttatgtgctagtgagctattgtgataa |
24298697 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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