View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13240_low_3 (Length: 534)

Name: NF13240_low_3
Description: NF13240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13240_low_3
NF13240_low_3
[»] chr5 (5 HSPs)
chr5 (194-516)||(35915101-35915421)
chr5 (24-104)||(35915444-35915524)
chr5 (97-152)||(18465535-18465590)
chr5 (97-142)||(13362811-13362856)
chr5 (97-142)||(23335686-23335731)
[»] chr2 (3 HSPs)
chr2 (21-182)||(5098718-5098879)
chr2 (37-79)||(5098864-5098906)
chr2 (88-184)||(36636907-36637003)
[»] chr1 (5 HSPs)
chr1 (16-182)||(51420347-51420512)
chr1 (47-137)||(30788393-30788483)
chr1 (47-79)||(51420492-51420524)
chr1 (97-142)||(30802437-30802482)
chr1 (96-152)||(37639373-37639429)
[»] chr3 (3 HSPs)
chr3 (68-142)||(17627181-17627255)
chr3 (93-142)||(19385290-19385339)
chr3 (97-142)||(51362417-51362462)
[»] scaffold0337 (1 HSPs)
scaffold0337 (68-142)||(7058-7132)
[»] chr6 (1 HSPs)
chr6 (68-141)||(34399683-34399756)
[»] chr7 (1 HSPs)
chr7 (97-142)||(30428914-30428959)
[»] chr4 (2 HSPs)
chr4 (93-142)||(26447387-26447436)
chr4 (96-152)||(50563707-50563763)


Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 194 - 516
Target Start/End: Complemental strand, 35915421 - 35915101
Alignment:
Q  194 atttattatgactaaaccaatcacgtccatataatatgtcaattagaaaagcaaagaaaaacagaacttcccactaagtcattaatgagattcctgacat 293  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35915421 atttagtatcactaaaccaatcacgtccatataatatgtcaattagaaaagcaaagaaaaacagaacttcccactaagtcattaatgagattcctgacat 35915322  T
Q  294 gcatttaagttgtagggattattataaatgaagctcatttccatattgaaacactaggctatcctcgcattaactgcctcacatgattcaaagcttcatt 393  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  35915321 gcatttaagttgtagggattattataaatgaagctcatttccatattgaaacactaggctatcctcgcattaattgcctcacatgattcaaagcttcatt 35915222  T
Q  394 ttcatctctttcaaaataaaacacctctcctttcatgctttgactgtatctttgttttctaaaagcctnnnnnnnngaaggtaatatatatgtgtccttc 493  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||    
T  35915221 ttcatctctttcaaaataaaacacctctcctttcatgctttgactgtatctttgttttctaaaagcctaaaaaaa--aaggtaatatatatgtgtccttc 35915124  T
Q  494 aacaataaaataattaagcctat 516  Q
    |||||||||||||||||||||||    
T  35915123 aacaataaaataattaagcctat 35915101  T

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Target: chr5; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 35915524 - 35915444
Alignment:
Q  24 gttgtgagagtgtagggtgagtcacgtcggagcaaatctgatggttgtgagagtgtgaactgagagacttagaattattac 104  Q
    |||||||||||||||||| | |||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  35915524 gttgtgagagtgtagggtaaatcacgttggagcaaatctgatggttgtgagagtgtgagctgagagacctagaattattac 35915444  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 152
Target Start/End: Original strand, 18465535 - 18465590
Alignment:
Q  97 attattacacgtatacaataaatctgatggttatgaaatgtttatggaggatgcat 152  Q
    |||||||||||| |||| || ||||||||||| |||| |||||||| |||||||||    
T  18465535 attattacacgtgtacactagatctgatggttgtgaagtgtttatgcaggatgcat 18465590  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 142
Target Start/End: Complemental strand, 13362856 - 13362811
Alignment:
Q  97 attattacacgtatacaataaatctgatggttatgaaatgtttatg 142  Q
    ||||||||||||||||| || ||||||||||| |||| ||||||||    
T  13362856 attattacacgtatacactagatctgatggttgtgaagtgtttatg 13362811  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 142
Target Start/End: Original strand, 23335686 - 23335731
Alignment:
Q  97 attattacacgtatacaataaatctgatggttatgaaatgtttatg 142  Q
    |||||||||||| |||| || ||||||||||| |||||||||||||    
T  23335686 attattacacgtgtacactagatctgatggttgtgaaatgtttatg 23335731  T

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Target: chr2 (Bit Score: 93; Significance: 5e-45; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 21 - 182
Target Start/End: Complemental strand, 5098879 - 5098718
Alignment:
Q  21 atggttgtgagagtgtagggtgagtcacgtcggagcaaatctgatggttgtgagagtgtgaactgagagacttagaattattacacgtatacaataaatc 120  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||| ||||||||||     
T  5098879 atggttgtgaaagtgtagggtgagtcacgtcggagcaaatctgatggttgtgagagtgtgagctgagagacctaggattattacacgtgtacaataaatt 5098780  T
Q  121 tgatggttatgaaatgtttatggaggatgcatnnnnnnntaacttatgcaaaataacttttg 182  Q
    |||||||| |||| |||||||| ||| |||||       | ||||||||| |||||||||||    
T  5098779 tgatggttgtgaagtgtttatgcagggtgcataaggaaatgacttatgcataataacttttg 5098718  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 37 - 79
Target Start/End: Complemental strand, 5098906 - 5098864
Alignment:
Q  37 agggtgagtcacgtcggagcaaatctgatggttgtgagagtgt 79  Q
    |||||||||||||||||||||||| |||||||||||| |||||    
T  5098906 agggtgagtcacgtcggagcaaatatgatggttgtgaaagtgt 5098864  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 184
Target Start/End: Original strand, 36636907 - 36637003
Alignment:
Q  88 agacttagaattattacacgtatacaataaatctgatggttatgaaatgtttatggaggatgcatnnnnnnntaacttatgcaaaataacttttgcc 184  Q
    |||||||| |||||||||||| || || ||||||||||||| |||| |||||||| ||| | |||       | ||||||||| |||||||||||||    
T  36636907 agacttaggattattacacgtgtaaaacaaatctgatggttgtgaagtgtttatgtagggtacataagaaaatgacttatgcataataacttttgcc 36637003  T

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Target: chr1 (Bit Score: 90; Significance: 3e-43; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 16 - 182
Target Start/End: Complemental strand, 51420512 - 51420347
Alignment:
Q  16 atctaatggttgtgagagtgtagggtgagtcacgtcggagcaaatctgatggttgtgagagtgtgaactgagagacttagaattattacacgtatacaat 115  Q
    |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||| |||||||| ||| || |||    
T  51420512 atctgatggttgtgagagtgtagggtgagtcacgtcggagcaaatatgatggttgtgagagtgtgagctgagagacctaggattattactcgtgtataat 51420413  T
Q  116 aaatctgatggttatgaaatgtttatggaggatgcatnnnnnnntaacttatgcaaaataacttttg 182  Q
    ||||||||||||| || |||||||||| |||||||||       | ||||||||| |||||||||||    
T  51420412 aaatctgatggttgtg-aatgtttatgcaggatgcataaagaattgacttatgcataataacttttg 51420347  T

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Target: chr1; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 47 - 137
Target Start/End: Complemental strand, 30788483 - 30788393
Alignment:
Q  47 acgtcggagcaaatctgatggttgtgagagtgtgaactgagagacttagaattattacacgtatacaataaatctgatggttatgaaatgt 137  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||| |||||||||| |||||||| ||||||||    
T  30788483 acgtcagagcaaatctgatggttgtgagagtgtgagctgagagacctagaattattatacgtgtacaataaatatgatggttgtgaaatgt 30788393  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 47 - 79
Target Start/End: Complemental strand, 51420524 - 51420492
Alignment:
Q  47 acgtcggagcaaatctgatggttgtgagagtgt 79  Q
    |||||||||||||||||||||||||||||||||    
T  51420524 acgtcggagcaaatctgatggttgtgagagtgt 51420492  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 142
Target Start/End: Complemental strand, 30802482 - 30802437
Alignment:
Q  97 attattacacgtatacaataaatctgatggttatgaaatgtttatg 142  Q
    |||||||||||| |||| || ||||||||||| |||||||||||||    
T  30802482 attattacacgtgtacactagatctgatggttgtgaaatgtttatg 30802437  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 96 - 152
Target Start/End: Complemental strand, 37639429 - 37639373
Alignment:
Q  96 aattattacacgtatacaataaatctgatggttatgaaatgtttatggaggatgcat 152  Q
    ||||||||||||| |||| || ||||||||||| |||| |||||||| ||| |||||    
T  37639429 aattattacacgtgtacactagatctgatggttgtgaagtgtttatgcagggtgcat 37639373  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 68 - 142
Target Start/End: Original strand, 17627181 - 17627255
Alignment:
Q  68 ttgtgagagtgtgaactgagagacttagaattattacacgtatacaataaatctgatggttatgaaatgtttatg 142  Q
    |||||||||||||| |||||| || |||||||||||||||| |||| || ||||||||||| |||| ||||||||    
T  17627181 ttgtgagagtgtgagctgagaaacctagaattattacacgtgtacactagatctgatggttgtgaagtgtttatg 17627255  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 93 - 142
Target Start/End: Original strand, 19385290 - 19385339
Alignment:
Q  93 tagaattattacacgtatacaataaatctgatggttatgaaatgtttatg 142  Q
    |||||||||||||||| |||| |||||||||||||| |||| ||||||||    
T  19385290 tagaattattacacgtgtacactaaatctgatggttgtgaagtgtttatg 19385339  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 142
Target Start/End: Original strand, 51362417 - 51362462
Alignment:
Q  97 attattacacgtatacaataaatctgatggttatgaaatgtttatg 142  Q
    |||||||||||| |||| |||||||||||||| |||| ||||||||    
T  51362417 attattacacgtgtacactaaatctgatggttgtgaagtgtttatg 51362462  T

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Target: scaffold0337 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 142
Target Start/End: Complemental strand, 7132 - 7058
Alignment:
Q  68 ttgtgagagtgtgaactgagagacttagaattattacacgtatacaataaatctgatggttatgaaatgtttatg 142  Q
    |||||||||||||| |||||| || ||| ||||||||| || |||| || ||||||||||| |||| ||||||||    
T  7132 ttgtgagagtgtgagctgagaaacctaggattattacatgtgtacactagatctgatggttgtgaagtgtttatg 7058  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 34399756 - 34399683
Alignment:
Q  68 ttgtgagagtgtgaactgagagacttagaattattacacgtatacaataaatctgatggttatgaaatgtttat 141  Q
    |||||||||||||||||||||  | ||| |||||||||||| |||| || |||||||| || |||| |||||||    
T  34399756 ttgtgagagtgtgaactgagaagcctaggattattacacgtgtacactagatctgatgattgtgaagtgtttat 34399683  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 142
Target Start/End: Complemental strand, 30428959 - 30428914
Alignment:
Q  97 attattacacgtatacaataaatctgatggttatgaaatgtttatg 142  Q
    |||||||||||| |||| || ||||||||||| |||||||||||||    
T  30428959 attattacacgtgtacactagatctgatggttgtgaaatgtttatg 30428914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 93 - 142
Target Start/End: Original strand, 26447387 - 26447436
Alignment:
Q  93 tagaattattacacgtatacaataaatctgatggttatgaaatgtttatg 142  Q
    |||||||||||||||| |||| || ||||||||||| |||| ||||||||    
T  26447387 tagaattattacacgtgtacactagatctgatggttgtgaagtgtttatg 26447436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 96 - 152
Target Start/End: Original strand, 50563707 - 50563763
Alignment:
Q  96 aattattacacgtatacaataaatctgatggttatgaaatgtttatggaggatgcat 152  Q
    ||||||||||||| |||| || ||||||||||| |||| |||||||| ||| |||||    
T  50563707 aattattacacgtgtacactagatctgatggttgtgaagtgtttatgcagggtgcat 50563763  T

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