View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13240_low_4 (Length: 514)
Name: NF13240_low_4
Description: NF13240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13240_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 315; Significance: 1e-177; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 125 - 500
Target Start/End: Complemental strand, 4865344 - 4864965
Alignment:
| Q |
125 |
gctttcttaataaaaattacatactccaatgatgtatgggaaattttacccctctttcatttacatgaccagctctttcacttaatgagagtgagagttt |
224 |
Q |
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| T |
4865344 |
gctttcttaataaaaattacatactccaatgatgtatgggaaattttacctctatttcatttacaggaccagctctttcacttaatgagagtgagagttt |
4865245 |
T |
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| Q |
225 |
aaaatatgaaaatggtgatgtagtcgccactgnnnnnnnn----aatgtgactactttaaaatgcagccataattattttaatgtggattttgtaacaaa |
320 |
Q |
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| T |
4865244 |
aaaatatgataatggtgatgtagtcgccactgttttttttttttaatgtgactactttaaaatgcagccataattattttaatgtggtttttgtaacaaa |
4865145 |
T |
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| Q |
321 |
gagatcttttgaccatttcaaagttgtcaatttcacagaaatttcccttcctacctctcaatgtttataagaataaataaatgtaacttctagcattcca |
420 |
Q |
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| T |
4865144 |
gagatcttttgaccatttcaaagttgtcaatttcacagaaatttcccttcctacctttcaatgtttataagaataaataaatgtaacttctagcattcca |
4865045 |
T |
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| Q |
421 |
aacctcaacaacaacaacataatcaatccttcttcaccctcttctcacacaactatggcaaactcgataaacaagaaact |
500 |
Q |
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| T |
4865044 |
aacctcaacaacaacaacataatcaatccttcttcaccctcttctcacacaactatggcaaactcgataaacaagaaact |
4864965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 4865431 - 4865344
Alignment:
| Q |
12 |
atgaaaatgaaatctttcctaattaagagataacttgc--------ctaactgtctttagtgatgttatgtgccctctttctcatctg |
91 |
Q |
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| T |
4865431 |
atgaaaatgaaatctttcctaattaagagataacttgcgctccaagctaactgtctttagtgatgttatgtgccctctttctcatctg |
4865344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 429 - 494
Target Start/End: Complemental strand, 4673814 - 4673749
Alignment:
| Q |
429 |
caacaacaacataatcaatccttcttcaccctcttctcacacaactatggcaaactcgataaacaa |
494 |
Q |
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| T |
4673814 |
caacaacaacagaatcaacccttcttcaccctcttctcacacagctatggcaaactccataaacaa |
4673749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 492
Target Start/End: Original strand, 4711028 - 4711134
Alignment:
| Q |
386 |
tataagaataaataaatgtaacttctagcattccaaacctcaacaacaacaacataatcaatccttcttcaccctcttctcacacaactatggcaaactc |
485 |
Q |
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| T |
4711028 |
tataacaataaataaatgcaacttcaagcatcctaacactcaacaagaaaaacaaaatctactcttcttcactctattttcacataactatggcaaactc |
4711127 |
T |
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| Q |
486 |
gataaac |
492 |
Q |
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|||||| |
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| T |
4711128 |
cataaac |
4711134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 449 - 494
Target Start/End: Complemental strand, 4637942 - 4637897
Alignment:
| Q |
449 |
cttcttcaccctcttctcacacaactatggcaaactcgataaacaa |
494 |
Q |
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||||||||| ||||||||||||| ||||||||||||| |||||||| |
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| T |
4637942 |
cttcttcactctcttctcacacagctatggcaaactccataaacaa |
4637897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 449 - 494
Target Start/End: Complemental strand, 4644780 - 4644735
Alignment:
| Q |
449 |
cttcttcaccctcttctcacacaactatggcaaactcgataaacaa |
494 |
Q |
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||||||||| ||||||||||||||||||||||||| | |||||||| |
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| T |
4644780 |
cttcttcactctcttctcacacaactatggcaaacaccataaacaa |
4644735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 450 - 494
Target Start/End: Complemental strand, 4654583 - 4654539
Alignment:
| Q |
450 |
ttcttcaccctcttctcacacaactatggcaaactcgataaacaa |
494 |
Q |
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|||||||| ||||||||||||| |||||||||||| |||||||| |
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| T |
4654583 |
ttcttcacactcttctcacacagatatggcaaactccataaacaa |
4654539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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