View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13240_low_5 (Length: 492)
Name: NF13240_low_5
Description: NF13240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13240_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 8 - 463
Target Start/End: Original strand, 37270380 - 37270831
Alignment:
| Q |
8 |
actctcccttaacctcgactaagagcagctgttctagtacatttcaacgtctcacattgcttaggaattaacgtcaatgatagttcatataaaaaaccac |
107 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
37270380 |
actctcccttaacctcgactaagtgcagctgttctagtacatttcaacgtctcacattgcttaggaattaacgtcaatgatagtttatataaaaaaccac |
37270479 |
T |
|
| Q |
108 |
acttctcaacttaacgagacactttttacaacgaacaaaatcgtgagggttcactcaacgactcaaaatggacaatacattaaaatgtggtgctagcgta |
207 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
37270480 |
acttttcaacttaacgagacactttttacaacggacaaaatcgtgagggttcactcaacgactcaaaatggacaatacattaaaatgtggtgctagcata |
37270579 |
T |
|
| Q |
208 |
cttgaaaatataagggaacaaaacctaaacctggcatattttagattagacagtatttcaagatttaatggtttaaaccgaatatattatcnnnnnnngg |
307 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
37270580 |
cttgaaaatataagggaacaaaacctaaa-ctggcatattttagattagacagtatttcaagatttaatggtttaaaccgaatatattatcaaaaaaagg |
37270678 |
T |
|
| Q |
308 |
ttgagattgaataaataatttgatctattataaattactgatagagtgtttggatgcacgtttacaccttaaatatcacgtttcgagacactttagatga |
407 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37270679 |
ttgagattgaataaataatttgatc---tataaactactgatagagtgtttggatgcacgtttacaccttaaatatcacgtttcgagacactttagatgg |
37270775 |
T |
|
| Q |
408 |
aaaaatagaaaagccataatatttagcttcttggctaaagcacgtttagagcaaat |
463 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37270776 |
aaaaatagagaagccatgatatttagcttcttggctaaagcacgtttagagcaaat |
37270831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 352 - 439
Target Start/End: Complemental strand, 4747921 - 4747834
Alignment:
| Q |
352 |
agtgtttggatgcacgtttacaccttaaatatcacgtttcgagacactttagatgaaaaaatagaaaagccataatatttagcttctt |
439 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| || |||||| ||||| ||||||||| |
|
|
| T |
4747921 |
agtgtttggatgcacgtttacaccttaaatatcacgtttcgaggcactttagatgggaaaatggagaagccacaatatgtagcttctt |
4747834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 350 - 443
Target Start/End: Complemental strand, 21524183 - 21524090
Alignment:
| Q |
350 |
agagtgtttggatgcacgtttacaccttaaatatcacgtttcgagacactttagatgaaaaaatagaaaagccataatatttagcttcttggct |
443 |
Q |
| |
|
||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||| ||||| || |||||| ||||| |||||||||||| |
|
|
| T |
21524183 |
agagtgtttagatggacgtttacaccttaaatatcacgtttcgaggcactttagatgggaaaatggagaagccacaatatgcagcttcttggct |
21524090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 349 - 406
Target Start/End: Complemental strand, 32339074 - 32339018
Alignment:
| Q |
349 |
tagagtgtttggatgcacgtttacaccttaaatatcacgtttcgagacactttagatg |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
32339074 |
tagagtgtttggatgcacgtttacaccttaaatatcac-tttcgaggcactttagatg |
32339018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 350 - 463
Target Start/End: Original strand, 33035115 - 33035228
Alignment:
| Q |
350 |
agagtgtttggatgcacgtttacaccttaaatatcacgtttcgagacactttagatgaaaaaatagaaaagccataatatttagcttcttggctaaagca |
449 |
Q |
| |
|
||||||||||||||||||||| |||||| || ||| ||||| ||| |||| || ||| |||||||| ||| | ||||| ||||||||| || | ||| |
|
|
| T |
33035115 |
agagtgtttggatgcacgtttgcaccttgaacatcgcgttttgaggcactgtaaatgtgaaaatagagaagttacaatatgtagcttcttagcagatgca |
33035214 |
T |
|
| Q |
450 |
cgtttagagcaaat |
463 |
Q |
| |
|
|| ||||||||||| |
|
|
| T |
33035215 |
cgattagagcaaat |
33035228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 355 - 461
Target Start/End: Original strand, 4047449 - 4047559
Alignment:
| Q |
355 |
gtttggatgcacgtttacaccttaaatatcacgtttcgagaca-ctttagatgaaaaaatagaaaagccataatatttag---cttcttggctaaagcac |
450 |
Q |
| |
|
|||||||||| | ||| |||||| |||||||||||| || || |||||||| ||||| ||||||||| ||||| ||| |||| ||||| |||||| |
|
|
| T |
4047449 |
gtttggatgcccatttgcaccttgaatatcacgttttgatgcatttttagatgtgaaaatggaaaagccacaatatgtagcgccttcatggctgaagcac |
4047548 |
T |
|
| Q |
451 |
gtttagagcaa |
461 |
Q |
| |
|
||||||||||| |
|
|
| T |
4047549 |
gtttagagcaa |
4047559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 387 - 463
Target Start/End: Complemental strand, 41605073 - 41604997
Alignment:
| Q |
387 |
gtttcgagacactttagatgaaaaaatagaaaagccataatatttagcttcttggctaaagcacgtttagagcaaat |
463 |
Q |
| |
|
|||| ||| ||||||||||| ||||| || |||||| ||||| ||||||||| || || ||||||| ||||||||| |
|
|
| T |
41605073 |
gttttgaggcactttagatgtgaaaatggagaagccacaatatatagcttcttcgcaaacgcacgttgagagcaaat |
41604997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University